View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_high_9 (Length: 394)
Name: NF2972_high_9
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_high_9 |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 165026 - 164652
Alignment:
| Q |
20 |
cacccaacaagcaagcatacataaaaccttataaatatataaatgttaatggaatatttgaatcaattcaccttttcaatggaaaactaaaatgctaatc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
165026 |
cacccaacaagcaagcatacataaaaccttataaatatataaatgttaatggaatatttgaatcaattcaccttttcaacggaaaactaaaaagctaatc |
164927 |
T |
|
| Q |
120 |
ccactccagttgatgcatacagttaaatgatcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164926 |
ccactccagttgatgcatacagttaaatgatcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcat |
164827 |
T |
|
| Q |
220 |
cctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataa |
319 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
164826 |
cctcgtagtggatgtgcttcattgtaacttcaagagctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataa |
164727 |
T |
|
| Q |
320 |
gctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcatt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
164726 |
gctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcatt |
164652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 103 - 394
Target Start/End: Complemental strand, 103983 - 103692
Alignment:
| Q |
103 |
aaactaaaatgctaatcccactccagttgatgcatacagttaaatgatcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttat |
202 |
Q |
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||||||| | |||||| | ||| |||| ||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
103983 |
aaactaagaagctaattcaacttcagtcgatgcataccgctaaataatcaatatgcttaattgctatgctacttaccttttccacacacccaatggttag |
103884 |
T |
|
| Q |
203 |
gtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggc |
302 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
103883 |
gtatcgactgttctcatcctcgtagtggatatgcttcattgtaacttcaagggctctttttctgaccagcttgttgaaaggccagcgagtgagaagcggc |
103784 |
T |
|
| Q |
303 |
tcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcatt |
394 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
103783 |
tcggtaaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaatatcttcctgtgagacataaaatagatcatt |
103692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 104049 - 104009
Alignment:
| Q |
20 |
cacccaacaagcaagcatacataaaaccttataaatatata |
60 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
104049 |
cacccaacaagcaagcatacataatacctgataaatatata |
104009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 174 - 394
Target Start/End: Complemental strand, 13052815 - 13052590
Alignment:
| Q |
174 |
cttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagct |
273 |
Q |
| |
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||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||| ||| ||| | || | |
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| T |
13052815 |
cttaccttttctacagcccccatggttatgtatcgactattctcatcctcgtagtggatatgcttcattcttacttgaagggctttttctctaatcaatt |
13052716 |
T |
|
| Q |
274 |
tgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcc-- |
371 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13052715 |
tgttgaaaggccaacgagtgagaagtggctcggtgaatatatagaagctatcccatatcagatcttgtatcaaaggatgaggatagtaaagatcttcctg |
13052616 |
T |
|
| Q |
372 |
tatga---gacataaaatggatcatt |
394 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
13052615 |
tatgagacgacataaaatggatcatt |
13052590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 13052939 - 13052846
Alignment:
| Q |
20 |
cacccaacaagcaagcatacataaaaccttataaatatataaatgt---taatggaatatttgaatcaattcaccttttcaatggaaaactaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||| |||| |||||||||||||||| ||| ||||||||||||||||||| |
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| T |
13052939 |
cacccaacaagcaagcatacataaagcctgataactatatacatgttaataatggaatatttgaaatgattttatttttcaatggaaaactaaa |
13052846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 150 - 372
Target Start/End: Original strand, 92372 - 92594
Alignment:
| Q |
150 |
tcaatatgcttaattgctatgctacttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaactt |
249 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||| || |||||||||| |||| |
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| T |
92372 |
tcaatatgcttaattgttatactaaataccttttccacacatgcaacagttatgtatcgactattctcatcctcgtagtgaatatgcttcattgctactt |
92471 |
T |
|
| Q |
250 |
caagggctctttttctgaccagcttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaagg |
349 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||||||||||||| ||||| ||||| || || | ||| |||||||||||||| | ||||||||||||||| |
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|
| T |
92472 |
gtagggctttttctctgaccaacttgttgaaaggccaacgagttagaagtggctcagtaaaaaggtaaaagctatcccatattaaatcttgtatcaaagg |
92571 |
T |
|
| Q |
350 |
atggggatagtaaagatcttcct |
372 |
Q |
| |
|
||| |||||||| | |||||||| |
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|
| T |
92572 |
atgaggatagtagatatcttcct |
92594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 92219 - 92265
Alignment:
| Q |
21 |
acccaacaagcaagcatacataaaaccttataaatatataaatgtta |
67 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||| |||||| |
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|
| T |
92219 |
acccaacaggcaagcatacataaagcctgataaatatatacatgtta |
92265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 176 - 372
Target Start/End: Original strand, 5722196 - 5722392
Alignment:
| Q |
176 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttg |
275 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| || |||||||| || ||||||| |||| || ||| ||| ||| ||||||||| |
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|
| T |
5722196 |
taccttttccacacacccaatggttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
5722295 |
T |
|
| Q |
276 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
372 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5722296 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccataatagatcttgtatcaaaggatggggatagtaaagatcttcct |
5722392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 176 - 372
Target Start/End: Original strand, 5669932 - 5670128
Alignment:
| Q |
176 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttg |
275 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||| || |||||||| || ||||||| |||| || ||| ||| ||| ||||||||| |
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|
| T |
5669932 |
taccttttccacacacccaatggttatgtatcgactattcttatcttcatagtggatatgtttcattgctacttggagagctttttctctaaccagcttg |
5670031 |
T |
|
| Q |
276 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
372 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5670032 |
tttaatggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatgtggatagtaaagatcttcct |
5670128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 176 - 372
Target Start/End: Original strand, 5691809 - 5692005
Alignment:
| Q |
176 |
taccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagcttg |
275 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||||| || |||||||| || ||||||| |||| || ||| ||| ||| | ||||||| |
|
|
| T |
5691809 |
taccttttccacacatccaatagttatgtatcgactattctcatcttcatagtggatatgtttcattgctacttggagagctttttctctaatcagcttg |
5691908 |
T |
|
| Q |
276 |
ttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
372 |
Q |
| |
|
|| || |||||| |||| | ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5691909 |
tttaacggccaatgagtcaaaagtggctccatgaatatgtataaactatcccatattagatcttgtatcaaaggatggggatagtaaagatcttcct |
5692005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 372
Target Start/End: Original strand, 12137390 - 12137589
Alignment:
| Q |
173 |
acttaccttttccacagacgcaatggttatgtatcgactattctcatcctcgtagtggatgtgcttcattgtaacttcaagggctctttttctgaccagc |
272 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| || |||||||| ||||||||||| |||| ||||||| ||| ||| | || | |
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|
| T |
12137390 |
acttaccttttccacgcatccaatggttatgtatcgactattctcatcttcatagtggatatgcttcattgttacttgaagggctttttctctaatcaac |
12137489 |
T |
|
| Q |
273 |
ttgttgaaaggccaacgagtgagaagcggctcggtgaatatgtataagctatcccatatcagatcttgtatcaaaggatggggatagtaaagatcttcct |
372 |
Q |
| |
|
|||||||||||||||||||| |||| || || ||||||||||||| |||||||| || |||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
12137490 |
ttgttgaaaggccaacgagttagaattggttcaatgaatatgtataaactatcccacataagatcttgtacaaatggatgaggatagtaaaggtcttcct |
12137589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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