View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_low_11 (Length: 339)
Name: NF2972_low_11
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 129 - 321
Target Start/End: Complemental strand, 24743693 - 24743500
Alignment:
| Q |
129 |
tgatagactatattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaa-ctgttgaaattttattgtgggtttagatgatat |
227 |
Q |
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| T |
24743693 |
tgatagactagattcgatgttcatgatttctttatcatgttgttcatctgcattttatttggtaaaactgttgaaattttattgtgggtttagatgatat |
24743594 |
T |
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| Q |
228 |
gttctgatagctgccagcaatactaggactgcacttttaaaactacataaattaaagtaggttgaactgtacttgtagtaagctattcccgtgg |
321 |
Q |
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| T |
24743593 |
gttctgatagctgccagcaatactaggactgcacttttaaaactacataaattaaagtaggttgaactgcacttgtagtaagctattcccgtgg |
24743500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 24743781 - 24743681
Alignment:
| Q |
14 |
tgacgattatcgatgctggagaagtta---attcggagaaaatcaatggtgatgctaatgttatcactgtttgaagggctaatgaaggtgattgactaga |
110 |
Q |
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| T |
24743781 |
tgacgattatcgatgctggagaagttattaattcggagaaaatcaatggtgatgctaatgttatcactgcttgaagggctaatgaaggtgatagactaga |
24743682 |
T |
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| Q |
111 |
t |
111 |
Q |
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| T |
24743681 |
t |
24743681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 45911624 - 45911532
Alignment:
| Q |
81 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
173 |
Q |
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| T |
45911624 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
45911532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 173
Target Start/End: Complemental strand, 19675318 - 19675226
Alignment:
| Q |
81 |
ttgaagggctaatgaaggtgattgactagatatttgtcttttgctctttgatagactatattcgatgttcatgatttctttatcatgttgttc |
173 |
Q |
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| T |
19675318 |
ttgaagagctaatgaaggtgacttacttactatttgtcttctgccttttgatagactagattcaatgtggatattttctttatcatgttgttc |
19675226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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