View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_low_13 (Length: 313)
Name: NF2972_low_13
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 127 - 303
Target Start/End: Complemental strand, 43985163 - 43984988
Alignment:
| Q |
127 |
caaaccgaggagatgtgtttcttaaaacttaaaaggtactgccaaatgtaattaacatatgtcctctgttgcctcctccttcttcgacccatgatcatgt |
226 |
Q |
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| T |
43985163 |
caaaccgaggagatgtgtttcttaaaacttaaaaggtactgcctaatgtaattaacatgtgtcctctgttgcctcctccttcttcgacccatgatcatgt |
43985064 |
T |
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| Q |
227 |
catcccacgccttctccttcttctttgtgcgatgaccacaccttctccttctccatctaacacattctccctctctg |
303 |
Q |
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| T |
43985063 |
catcccacgccttctccttcttctttgtgcgatgaccac-ccttctccttctccatctaacacattctccctctctg |
43984988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 43985264 - 43985192
Alignment:
| Q |
26 |
ccgtccattctccgacgagattctggtagggttgggtgagtttcttagtgttgagagaagcaatattgacaca |
98 |
Q |
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| T |
43985264 |
ccgtccattctccgacgagattctggtagggttgggtgagtttcttagtgttgagagaagcaatattgacaca |
43985192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 44003082 - 44002989
Alignment:
| Q |
186 |
tgtcctctgttgcctcctccttcttcgacccatgatcatgtcatcccacgccttctccttcttctttgtgcgatgaccacaccttctccttctc |
279 |
Q |
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| T |
44003082 |
tgtcctctgttgcttcctccttcttcgacccatgatcatgttttcccacgccttctccttcttctttgtccgacgaccacagcttctccttctc |
44002989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 8830928 - 8830880
Alignment:
| Q |
198 |
cctcctccttcttcgacccatgatcatgtcatcccacgccttctccttc |
246 |
Q |
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| T |
8830928 |
cctcctccttcttcgaaccacaatcatgtcatcccacaccttctccttc |
8830880 |
T |
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