View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2972_low_14 (Length: 299)
Name: NF2972_low_14
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 29448187 - 29448454
Alignment:
| Q |
20 |
ttccggtgtattgaattcctctgaggcagattgagaagtacttctactgttgaaccgttccgcagctgaaaatgttgtgtcgtctactttgattaatgta |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29448187 |
ttccggtgtattgaattcctctgaggcagattgagaagtacttctactgttgaactgttccgcagctgaaaatgttgtgtcgtctactttgattaatgta |
29448286 |
T |
|
| Q |
120 |
aatgttgtaggtttgtttgtatattcaacatggaaagataatctcattattcaaaccatgtacattacagaaaaattaaaaggcataattttgatttgtt |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29448287 |
aatgttgttggtttgtttgtatattcaacatggaaagataatctcattattcaaacca--tacattacagaaaaattaaaaggcataattttgatttgtt |
29448384 |
T |
|
| Q |
220 |
catacattttgcaaaggcaactatagctctgattggtttgcaaatttcaacttatccttgtcctcctttg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29448385 |
catacattttgcaaaggcaactatagctctgattggtttgcaaatttcaacttatccttgtcctcctttg |
29448454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 29455490 - 29455558
Alignment:
| Q |
21 |
tccggtgtattgaattcctctgaggcagattgagaagtacttctactgttgaaccgttccgcagctgaa |
89 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||| | |||||||| |
|
|
| T |
29455490 |
tccggtgtattgaattcctttgaggcagattgtgaagtccttctactgttgaactgttacacagctgaa |
29455558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 29456343 - 29456428
Alignment:
| Q |
204 |
ataattttgatttgttcatacattttgcaaaggcaactatagctctgattggtttgcaaatttcaacttatccttgtcctcctttgc |
290 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| | | |||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
29456343 |
ataaatttgatttgttcatacattttgtgaaggcaactattgtta-gattggtttgcaaacttcaacttatccttgcccttctttgc |
29456428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 8571406 - 8571551
Alignment:
| Q |
145 |
caacatggaaagataatctcattattcaaa-------ccatgtacattacagaaaaattaaaaggcataattttgatttgttcatacattttgcaaaggc |
237 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| |||||||| ||||| |||||||||| ||||||| ||||| || |||||| ||||| |
|
|
| T |
8571406 |
caacatggaaagattatctcattattcaaagttcaaaccat--acattacaataaaatcaaaaggcatagttttgatctgttcttatattttgtgaaggc |
8571503 |
T |
|
| Q |
238 |
aactatagctctgattggtttgcaaatttcaac-ttatccttgtcctc |
284 |
Q |
| |
|
|||||| | | ||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
8571504 |
aactattgattcaattagtttgaaaatttcaactttatccttgtcctc |
8571551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University