View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2972_low_17 (Length: 255)

Name: NF2972_low_17
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2972_low_17
NF2972_low_17
[»] chr1 (5 HSPs)
chr1 (44-239)||(49784973-49785173)
chr1 (52-118)||(21203024-21203091)
chr1 (44-77)||(45228377-45228410)
chr1 (44-77)||(51468441-51468474)
chr1 (44-77)||(51468884-51468917)
[»] chr6 (5 HSPs)
chr6 (47-136)||(7629785-7629874)
chr6 (44-136)||(7628367-7628459)
chr6 (44-136)||(21094447-21094540)
chr6 (53-107)||(24318059-24318113)
chr6 (44-77)||(34995453-34995486)
[»] chr2 (2 HSPs)
chr2 (44-136)||(44800915-44801007)
chr2 (50-109)||(371959-372018)
[»] chr3 (4 HSPs)
chr3 (50-107)||(5409405-5409462)
chr3 (44-77)||(11346914-11346947)
chr3 (44-77)||(37609423-37609456)
chr3 (44-77)||(53765949-53765982)
[»] chr8 (3 HSPs)
chr8 (50-109)||(22913257-22913315)
chr8 (44-77)||(30640899-30640932)
chr8 (44-77)||(41638135-41638168)
[»] chr4 (3 HSPs)
chr4 (44-77)||(17356463-17356496)
chr4 (48-136)||(35925734-35925822)
chr4 (50-98)||(47243027-47243075)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 49784973 - 49785173
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaattgatgatattaaaaactataggaccaattt-----nn 138  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||           
T  49784973 aggggattaaaattattaaaattggatcaaattgcggacgaaaacaaagataaaggaccaaatcgatgatattaagaactataggaccaatttaaagaaa 49785072  T
Q  139 nnnnnnnnttaagttaagggatcggaagcttaattaaacctacttaaaatgttggattagttgtaagaatttataatttaactttgataaatatggttca 238  Q
            ||||||||||||| ||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49785073 aaaaagaattaagttaagggaccgagaacttaattaaacctaattaaaatgttggattagttgtaagaatttataatttaactttgataaatatggttca 49785172  T
Q  239 t 239  Q
    |    
T  49785173 t 49785173  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 21203091 - 21203024
Alignment:
Q  52 aaaattattaaaattggaacaaattgc-ggacgaaaacaaagataaaggatcaaattgatgatattaa 118  Q
    |||||||| ||||||||| |||||||  ||||||||||||||||||||||  || |||||||| ||||    
T  21203091 aaaattatgaaaattggatcaaattgatggacgaaaacaaagataaaggacaaagttgatgattttaa 21203024  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 45228410 - 45228377
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  45228410 aggggattaaaattattaaaattggaccaaattg 45228377  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 51468474 - 51468441
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  51468474 aggggattaaaattattaaaattggaccaaattg 51468441  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 51468884 - 51468917
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  51468884 aggggattaaaattattaaaattggaccaaattg 51468917  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 7629785 - 7629874
Alignment:
Q  47 ggattaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaattgatgatattaaaaactataggaccaattt 136  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||| |||| || ||||| | ||||||    
T  7629785 ggattaaaattattaaaattggatcaaattgcagaagaaaacaaagataaaagatcaaattgatgattttaagaattatagaatcaattt 7629874  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 7628459 - 7628367
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaattgatgatattaaaaactataggaccaattt 136  Q
    |||||||| ||||||| ||||||||   ||||||||||||||||||||||||||||| |||||||||||| ||||||  ||| ||||||||||    
T  7628459 aggggattgaaattatcaaaattggtttaaattgcggacgaaaacaaagataaaggaccaaattgatgattttaaaagttatgggaccaattt 7628367  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 21094540 - 21094447
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg-cggacgaaaacaaagataaaggatcaaattgatgatattaaaaactataggaccaattt 136  Q
    ||||||||||| |||| ||||||||| ||||||| ||||| ||| ||||||||||||| || |||| |||| |||| | |||| ||||||||||    
T  21094540 aggggattaaagttatcaaaattggatcaaattgacggacaaaaccaaagataaaggaccagattgttgattttaatagctatgggaccaattt 21094447  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 24318059 - 24318113
Alignment:
Q  53 aaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaatt 107  Q
    |||||| |||||| ||| |||||||  ||||||||||||||||||||| ||||||    
T  24318059 aaattaataaaatgggatcaaattgatgacgaaaacaaagataaaggaccaaatt 24318113  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 34995486 - 34995453
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  34995486 aggggattaaaattattaaaattggaccaaattg 34995453  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 44801007 - 44800915
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaattgatgatattaaaaactataggaccaattt 136  Q
    |||||||| ||||||| ||||||||  |||||||| ||||||||||||||||||||| |||||||||||| |||| |  ||| ||||||||||    
T  44801007 aggggattgaaattatcaaaattggttcaaattgcagacgaaaacaaagataaaggaccaaattgatgattttaatagttatgggaccaattt 44800915  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 371959 - 372018
Alignment:
Q  50 ttaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaattga 109  Q
    ||||||||| |||||| ||| |||||||  || |||||||||||||||||||||||||||    
T  371959 ttaaaattaataaaataggatcaaattgatgatgaaaacaaagataaaggatcaaattga 372018  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 5409462 - 5409405
Alignment:
Q  50 ttaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaatt 107  Q
    ||||||||| |||||||||| |||||||  || |||||||||||||||||| ||||||    
T  5409462 ttaaaattaataaaattggatcaaattgatgatgaaaacaaagataaaggaccaaatt 5409405  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 11346947 - 11346914
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||| |||||||||||||||||    
T  11346947 aggggattaaaattatcaaaattggaacaaattg 11346914  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 37609456 - 37609423
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  37609456 aggggattaaaattattaaaattggatcaaattg 37609423  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 53765949 - 53765982
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  53765949 aggggattaaaattattaaaattggatcaaattg 53765982  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 22913315 - 22913257
Alignment:
Q  50 ttaaaattattaaaattggaacaaattgcggacgaaaacaaagataaaggatcaaattga 109  Q
    ||||||||| |||||| ||| |||||||  ||||||||||||||| ||||||||||||||    
T  22913315 ttaaaattaataaaataggaccaaattgatgacgaaaacaaagat-aaggatcaaattga 22913257  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 30640932 - 30640899
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  30640932 aggggattaaaattattaaaattggatcaaattg 30640899  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 41638135 - 41638168
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||||||||||||| |||||||    
T  41638135 aggggattaaaattattaaaattggaccaaattg 41638168  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 17356496 - 17356463
Alignment:
Q  44 aggggattaaaattattaaaattggaacaaattg 77  Q
    |||||||||||||||| |||||||||||||||||    
T  17356496 aggggattaaaattatcaaaattggaacaaattg 17356463  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 35925822 - 35925734
Alignment:
Q  48 gattaaaattattaaaattggaacaaattgc-ggacgaaaacaaagataaaggatcaaattgatgatattaaaaactataggaccaattt 136  Q
    |||||||||||| |||||| || |||||||  |||||||||||| ||||||||| ||| |||||||| |||| | |||| |||| |||||    
T  35925822 gattaaaattatcaaaatttgatcaaattgatggacgaaaacaa-gataaaggaccaagttgatgattttaacagctatgggactaattt 35925734  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 47243075 - 47243027
Alignment:
Q  50 ttaaaattattaaaattggaacaaattgcggacgaaaacaaagataaag 98  Q
    ||||||||| |||||||||| ||||| |  |||||||||||||||||||    
T  47243075 ttaaaattaataaaattggaccaaatcgatgacgaaaacaaagataaag 47243027  T

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