View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_low_22 (Length: 241)
Name: NF2972_low_22
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_low_22 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 103746 - 103536
Alignment:
| Q |
14 |
gtatcaaaggatggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacat |
113 |
Q |
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| T |
103746 |
gtatcaaaggatggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacat |
103647 |
T |
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| Q |
114 |
tgtaaacaattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctca |
213 |
Q |
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| T |
103646 |
tgtaaacaattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctca |
103547 |
T |
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| Q |
214 |
actgtaagatg |
224 |
Q |
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||||||||||| |
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| T |
103546 |
actgtaagatg |
103536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 164706 - 164502
Alignment:
| Q |
14 |
gtatcaaaggatggggatagtaaatatcttcctgtgagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacacat |
113 |
Q |
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| T |
164706 |
gtatcaaaggatggggatagtaaagatcttcctatgagacataaaatggatcattatccctcctat------gttaaaaaggatgtgtaatttcacacat |
164613 |
T |
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| Q |
114 |
tgtaaacaattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctca |
213 |
Q |
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| T |
164612 |
tgtgatcaattaaagataaagactctaacctttgcacataggtgacgtgatttcgtccaattagttttttcataaggttgggtatggagttcttctctca |
164513 |
T |
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| Q |
214 |
actgtaagatg |
224 |
Q |
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||||||||||| |
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| T |
164512 |
actgtaagatg |
164502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 92562 - 92763
Alignment:
| Q |
14 |
gtatcaaaggatggggatagtaaatatcttcctgt-gagacataaaatagatcattatccctcctattatcatgataaagaggaagtgtaaatccacaca |
112 |
Q |
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| T |
92562 |
gtatcaaaggatgaggatagtagatatcttcctgttgag-cataaaatggaacattatccctcatac------gttaaagag-atgtgtaaattcataca |
92653 |
T |
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| Q |
113 |
ttgtaaacaattaaagacaatgactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctc |
212 |
Q |
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| T |
92654 |
ctgtcatgaattagagacaaagagcctcacctttgcacataggtggcgtgcttttttccagttaactttaccataaggttgagtatgaagttcttctctc |
92753 |
T |
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| Q |
213 |
aactgtaaga |
222 |
Q |
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|||||||||| |
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| T |
92754 |
aactgtaaga |
92763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 224
Target Start/End: Complemental strand, 13052551 - 13052461
Alignment:
| Q |
134 |
gactctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactgtaagatg |
224 |
Q |
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||||||||||||||||||| ||||||||||||| ||| | || |||||| ||||| ||| |||| | |||||||||||||||||||||| |
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| T |
13052551 |
gactctcacctttgcacattggtgacgtgatttgaaccaatcaactttttcgtaaggttgattatgaatttcttctctcaactgtaagatg |
13052461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 5722471 - 5722556
Alignment:
| Q |
138 |
ctcacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactgtaagat |
223 |
Q |
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|||||||||||||||||||||||| ||| ||| |||| |||||||||||| | ||| |||||||||||||||||| |||||| |
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| T |
5722471 |
ctcacctttgcacataggtgacgtactttttgccaattaactttttcataaggttctgtaaggagttcttctctcaactttaagat |
5722556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 5691973 - 5692006
Alignment:
| Q |
14 |
gtatcaaaggatggggatagtaaatatcttcctg |
47 |
Q |
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| T |
5691973 |
gtatcaaaggatggggatagtaaagatcttcctg |
5692006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 5722360 - 5722393
Alignment:
| Q |
14 |
gtatcaaaggatggggatagtaaatatcttcctg |
47 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
5722360 |
gtatcaaaggatggggatagtaaagatcttcctg |
5722393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 12137677 - 12137761
Alignment:
| Q |
140 |
cacctttgcacataggtgacgtgatttcgtccagttaattttttcataaggctgagtatggagttcttctctcaactgtaagatg |
224 |
Q |
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| T |
12137677 |
caccttcgcacactggtgacgtgcttttttccaattaacttttgcataaggttcagtatagagttcttctctcaactgtaagatg |
12137761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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