View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_low_24 (Length: 238)
Name: NF2972_low_24
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_low_24 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 21075483 - 21075274
Alignment:
| Q |
17 |
aaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaacacatttt |
116 |
Q |
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| T |
21075483 |
aaccaacagaacaccaaaacatgacggaccgtgaatggccctct-----atccccttctcaaaaccagctctgacgcgaaccacaacggaaacacatttt |
21075389 |
T |
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| Q |
117 |
tgaatcacataatagcgacgtgccgacgtcgaatctgttaaaacaaaattgtttgtaagacacccaaacgaaactgacaacgtagatgcaacgcacccac |
216 |
Q |
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| T |
21075388 |
tgaatcacataatagtgacgtgccaacgtcgaatctgttaaaacaaaattgtttgtaagacacccaaacgaaactgacaacatagatgcaacgc------ |
21075295 |
T |
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| Q |
217 |
gccgtttttacactctatgcca |
238 |
Q |
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||||||||||||||||||||| |
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| T |
21075294 |
-ccgtttttacactctatgcca |
21075274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 21021675 - 21021560
Alignment:
| Q |
17 |
aaccaacagaacatcaaaacaagacggaccgtgaatggccctatatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaacacatttt |
116 |
Q |
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|||||||| |||| ||||||||||| | |||||||| || | |||| || |||||||| |||||||||| ||||||||||||||| |||| |||||| |
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| T |
21021675 |
aaccaacataacaccaaaacaagacatatcgtgaatgtccatctatcccaaccccttctcaaaaccagctgcgacgcgaaccacaagagaaatgcatttt |
21021576 |
T |
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| Q |
117 |
tgaatcacataatagc |
132 |
Q |
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| T |
21021575 |
tgaatcacagaatagc |
21021560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 21021517 - 21021460
Alignment:
| Q |
172 |
taagacacccaaacgaaactgacaacgtagatgcaacgcacccacgccgtttttacact |
230 |
Q |
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| T |
21021517 |
taagacacacaaacgaaactgacgac-tagatgcaacacatccacgccatttttacact |
21021460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 13169252 - 13169300
Alignment:
| Q |
60 |
tatcacatccccttctaaaaaccagctctgacgcgaaccacaagggaaa |
108 |
Q |
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| T |
13169252 |
tatcacatccccttctcaaaaccaaccccgacacgaaccacaagggaaa |
13169300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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