View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_low_4 (Length: 465)
Name: NF2972_low_4
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 48 - 454
Target Start/End: Complemental strand, 39385357 - 39384960
Alignment:
| Q |
48 |
aaaatcatttgtgtatatattctgaataaacaatccccagtttataacatctaataaagtactataatgaaacttaatatgatcagtgatacttaatttg |
147 |
Q |
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| T |
39385357 |
aaaatcatttgtgtatatattctgaataaacaatccccagtttataacatctaataaagtactataatgaaacttaatatgatcagtgatacttaatttg |
39385258 |
T |
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| Q |
148 |
gaaatatcaatgaaggtacgctaaagtaacttagtttctcattcnnnnnnncctctagaaacctaacaattgatagtgtttttggtgtctatagagccnn |
247 |
Q |
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| T |
39385257 |
gaaatatcaatgaaggtacgctaaagtaacttagtttctcattcaaaaaaacctctagaaacctaacaattgatagtgtttttggtgtctatagagcc-- |
39385160 |
T |
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| Q |
248 |
nnnnnnnnnnnnnnnnnnatggaatttagacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaagtnnn |
347 |
Q |
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| T |
39385159 |
-------tttttttttttatggaatttagacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaaataaa |
39385067 |
T |
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| Q |
348 |
nnnnctagcaggaattcagacttctttgggtgttggatgaaatattttctgaaaatcacttcttcccttcacttggannnnnnnattaaaacaaagtcca |
447 |
Q |
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| T |
39385066 |
aaaactagcaggaattcagacttctttgggtgttggatggaatattttctgaaaatcacttcttcccttcacttggatttttttattaaaacaaagtcca |
39384967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 39180566 - 39180635
Alignment:
| Q |
275 |
agacttctttctccgtgccaaagtctggagctgagtacctcaaagttgaagaacaatcttacaaccaagt |
344 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
39180566 |
agacttctttctcagtgccaaagtctggaactgagtacctcaaagttgaagaataatcttacaaccaagt |
39180635 |
T |
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