View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2972_low_6 (Length: 441)

Name: NF2972_low_6
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2972_low_6
NF2972_low_6
[»] chr4 (35 HSPs)
chr4 (14-382)||(8984987-8985355)
chr4 (14-382)||(13700655-13701023)
chr4 (14-382)||(21304535-21304903)
chr4 (14-382)||(8979867-8980235)
chr4 (14-382)||(21299415-21299783)
chr4 (46-382)||(54991653-54991989)
chr4 (88-382)||(54990392-54990686)
chr4 (107-356)||(39999363-39999609)
chr4 (107-356)||(40004321-40004567)
chr4 (107-356)||(54343497-54343743)
chr4 (107-356)||(54348651-54348897)
chr4 (152-356)||(36359664-36359868)
chr4 (107-356)||(36354436-36354682)
chr4 (235-356)||(53798329-53798450)
chr4 (235-382)||(41393858-41394005)
chr4 (45-234)||(51019117-51019303)
chr4 (14-224)||(9763771-9763971)
chr4 (235-356)||(51018732-51018853)
chr4 (45-224)||(53797794-53797970)
chr4 (235-382)||(9763273-9763420)
chr4 (235-382)||(13695757-13695904)
chr4 (235-382)||(13711370-13711517)
chr4 (45-224)||(41393410-41393584)
chr4 (14-224)||(47046060-47046266)
chr4 (235-382)||(4207042-4207188)
chr4 (45-224)||(13710833-13711010)
chr4 (45-224)||(13695327-13695503)
chr4 (235-355)||(47045647-47045767)
chr4 (386-432)||(13699067-13699113)
chr4 (386-432)||(21301325-21301371)
chr4 (386-432)||(36357870-36357916)
chr4 (386-432)||(40002798-40002844)
chr4 (386-432)||(54346932-54346978)
chr4 (386-432)||(8981777-8981823)
chr4 (386-432)||(13702945-13702991)
[»] chr1 (21 HSPs)
chr1 (14-382)||(27711468-27711836)
chr1 (14-356)||(27716588-27716930)
chr1 (14-356)||(37409145-37409487)
chr1 (14-356)||(37404026-37404366)
chr1 (46-356)||(11250731-11251041)
chr1 (153-356)||(34317840-34318043)
chr1 (107-356)||(36684270-36684516)
chr1 (235-382)||(5725365-5725512)
chr1 (235-382)||(3585301-3585448)
chr1 (235-381)||(5730771-5730917)
chr1 (14-109)||(11387666-11387761)
chr1 (235-356)||(48245998-48246119)
chr1 (45-224)||(3584766-3584942)
chr1 (45-224)||(5730270-5730446)
chr1 (45-234)||(48246427-48246613)
chr1 (297-356)||(50959010-50959069)
chr1 (45-122)||(5725144-5725221)
chr1 (386-432)||(27715000-27715046)
chr1 (386-432)||(37405908-37405954)
chr1 (386-432)||(5728674-5728721)
chr1 (14-44)||(11251033-11251063)
[»] chr6 (22 HSPs)
chr6 (14-382)||(22702948-22703316)
chr6 (14-382)||(21401886-21402254)
chr6 (14-382)||(29490812-29491187)
chr6 (107-382)||(22697772-22698044)
chr6 (14-153)||(21396844-21396983)
chr6 (14-224)||(34376064-34376270)
chr6 (14-224)||(24191126-24191333)
chr6 (14-224)||(24192223-24192430)
chr6 (235-382)||(2817401-2817548)
chr6 (235-382)||(34142781-34142928)
chr6 (235-382)||(34155397-34155544)
chr6 (14-212)||(34142225-34142418)
chr6 (14-212)||(34154841-34155034)
chr6 (45-224)||(31981728-31981904)
chr6 (235-382)||(6727777-6727924)
chr6 (235-382)||(34376464-34376611)
chr6 (45-224)||(2817901-2818077)
chr6 (235-382)||(24190654-24190802)
chr6 (235-382)||(31983475-31983622)
chr6 (386-432)||(22699738-22699784)
chr6 (45-96)||(6728285-6728336)
chr6 (171-224)||(6728193-6728246)
[»] chr5 (24 HSPs)
chr5 (14-382)||(17510203-17510571)
chr5 (14-356)||(17505098-17505440)
chr5 (14-382)||(42019718-42020086)
chr5 (14-356)||(43579805-43580147)
chr5 (14-356)||(41858738-41859071)
chr5 (82-382)||(42024566-42024866)
chr5 (14-163)||(41853693-41853842)
chr5 (246-356)||(41853846-41853956)
chr5 (14-224)||(36253971-36254177)
chr5 (235-355)||(1413100-1413220)
chr5 (45-224)||(1413806-1413981)
chr5 (235-356)||(36254517-36254638)
chr5 (235-382)||(24770605-24770752)
chr5 (235-351)||(26709688-26709804)
chr5 (235-351)||(26979422-26979538)
chr5 (235-325)||(24776116-24776206)
chr5 (45-224)||(24776563-24776739)
chr5 (45-224)||(26709269-26709444)
chr5 (45-224)||(26979003-26979178)
chr5 (45-224)||(24771108-24771284)
chr5 (386-432)||(17508630-17508676)
chr5 (386-432)||(41857149-41857195)
chr5 (386-432)||(42023542-42023588)
chr5 (386-432)||(24772849-24772895)
[»] scaffold0517 (2 HSPs)
scaffold0517 (14-356)||(3708-4050)
scaffold0517 (386-432)||(2120-2166)
[»] chr2 (14 HSPs)
chr2 (14-382)||(40392464-40392832)
chr2 (14-356)||(40518075-40518422)
chr2 (107-356)||(42728175-42728421)
chr2 (152-355)||(42723007-42723210)
chr2 (107-356)||(44096596-44096842)
chr2 (165-356)||(44754161-44754352)
chr2 (165-356)||(44759327-44759518)
chr2 (165-353)||(40519929-40520122)
chr2 (235-382)||(4162895-4163042)
chr2 (235-382)||(28751021-28751168)
chr2 (45-224)||(4163331-4163507)
chr2 (45-224)||(28751483-28751659)
chr2 (386-432)||(42724940-42724986)
chr2 (386-432)||(44756092-44756138)
[»] chr3 (27 HSPs)
chr3 (14-349)||(17368864-17369199)
chr3 (14-356)||(55128935-55129276)
chr3 (107-382)||(20090191-20090463)
chr3 (107-382)||(20095316-20095588)
chr3 (107-356)||(15762585-15762831)
chr3 (107-356)||(15767746-15767992)
chr3 (235-382)||(3481649-3481796)
chr3 (235-356)||(34128437-34128558)
chr3 (235-356)||(17358566-17358686)
chr3 (235-356)||(30338126-30338247)
chr3 (14-224)||(3482166-3482373)
chr3 (235-382)||(30341204-30341351)
chr3 (235-356)||(54271312-54271433)
chr3 (45-224)||(17358003-17358179)
chr3 (45-224)||(34128923-34129099)
chr3 (14-224)||(4117345-4117550)
chr3 (45-224)||(10321608-10321784)
chr3 (235-325)||(3476249-3476339)
chr3 (235-325)||(4117007-4117097)
chr3 (45-224)||(54270809-54270986)
chr3 (45-224)||(3476699-3476876)
chr3 (386-432)||(3478439-3478485)
chr3 (386-432)||(15764511-15764557)
chr3 (386-432)||(17362634-17362680)
chr3 (386-432)||(17367276-17367322)
chr3 (386-432)||(20092142-20092188)
chr3 (152-224)||(30338506-30338578)
[»] chr7 (32 HSPs)
chr7 (107-382)||(33238296-33238568)
chr7 (152-382)||(33243515-33243745)
chr7 (107-356)||(47994094-47994340)
chr7 (107-356)||(47999269-47999515)
chr7 (235-382)||(21080321-21080468)
chr7 (235-356)||(2233978-2234099)
chr7 (45-224)||(2234384-2234560)
chr7 (235-382)||(32211965-32212112)
chr7 (235-382)||(42572600-42572747)
chr7 (235-356)||(17496100-17496221)
chr7 (235-356)||(17556993-17557114)
chr7 (235-382)||(12935084-12935231)
chr7 (235-382)||(19308876-19309023)
chr7 (14-224)||(43893003-43893210)
chr7 (235-382)||(47176496-47176643)
chr7 (45-224)||(12934562-12934738)
chr7 (45-224)||(17495568-17495744)
chr7 (45-224)||(17557470-17557646)
chr7 (45-224)||(21080793-21080969)
chr7 (45-224)||(42572110-42572286)
chr7 (242-356)||(16538699-16538813)
chr7 (242-356)||(16626849-16626963)
chr7 (235-382)||(43893542-43893689)
chr7 (45-224)||(16539166-16539342)
chr7 (45-224)||(16626320-16626496)
chr7 (45-224)||(19309365-19309541)
chr7 (45-212)||(32212419-32212584)
chr7 (303-382)||(47544749-47544828)
chr7 (386-432)||(33241732-33241778)
chr7 (386-432)||(47997529-47997575)
chr7 (14-60)||(47177024-47177069)
chr7 (152-224)||(47176904-47176976)
[»] scaffold0014 (3 HSPs)
scaffold0014 (107-356)||(31839-32085)
scaffold0014 (107-356)||(26667-26913)
scaffold0014 (386-432)||(30102-30148)
[»] scaffold0055 (1 HSPs)
scaffold0055 (107-356)||(3318-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (107-356)||(80971-81217)
[»] chr8 (24 HSPs)
chr8 (107-356)||(32010820-32011066)
chr8 (107-356)||(32015994-32016240)
chr8 (127-382)||(2165394-2165650)
chr8 (235-382)||(43998546-43998693)
chr8 (235-382)||(17955134-17955281)
chr8 (45-234)||(24884878-24885064)
chr8 (235-356)||(24885324-24885445)
chr8 (235-382)||(42513848-42513995)
chr8 (45-224)||(43998984-43999160)
chr8 (45-224)||(21643835-21644011)
chr8 (45-224)||(21643395-21643571)
chr8 (57-224)||(21641520-21641684)
chr8 (57-224)||(21641895-21642059)
chr8 (57-224)||(21642270-21642434)
chr8 (57-224)||(21643020-21643184)
chr8 (57-224)||(21642645-21642809)
chr8 (235-325)||(21641184-21641273)
chr8 (45-138)||(17955626-17955719)
chr8 (386-432)||(21645574-21645620)
chr8 (386-432)||(32014255-32014301)
chr8 (45-104)||(42514245-42514304)
chr8 (153-216)||(42514182-42514245)
chr8 (388-428)||(19434003-19434043)
chr8 (388-428)||(19570152-19570192)
[»] scaffold0594 (2 HSPs)
scaffold0594 (235-382)||(8534-8681)
scaffold0594 (45-224)||(8962-9138)
[»] scaffold0060 (2 HSPs)
scaffold0060 (45-234)||(37175-37361)
scaffold0060 (235-293)||(37654-37712)
[»] scaffold0166 (5 HSPs)
scaffold0166 (235-382)||(12986-13133)
scaffold0166 (235-325)||(18500-18590)
scaffold0166 (45-224)||(13493-13670)
scaffold0166 (45-224)||(18946-19122)
scaffold0166 (386-432)||(15233-15279)
[»] scaffold0165 (1 HSPs)
scaffold0165 (386-432)||(15542-15588)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 8985355 - 8984987
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985355 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 8985256  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8985255 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 8985156  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985155 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 8985056  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8985055 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 8984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 13700655 - 13701023
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700655 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 13700754  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13700755 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 13700854  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700855 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 13700954  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  13700955 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 13701023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 21304903 - 21304535
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304903 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21304804  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21304803 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 21304704  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304703 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 21304604  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  21304603 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 21304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 8980235 - 8979867
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980235 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 8980136  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  8980135 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattctcgagct 8980036  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8980035 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatatgggacataaaattttcaattcacactttacactagtttctccatccttgtg 8979936  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8979935 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 8979867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 21299783 - 21299415
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299783 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21299684  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  21299683 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcccgagct 21299584  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21299583 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtg 21299484  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  21299483 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 21299415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 46 - 382
Target Start/End: Original strand, 54991653 - 54991989
Alignment:
Q  46 tttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaag 145  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  54991653 tttcgaaaaaccactctaatatggtacgtaaaccactcgataaaccaaagaaggagaaaagaaagaacggttcgtcaacacaaaccgcgggagggagaag 54991752  T
Q  146 agaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtg 245  Q
    ||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54991753 agaggagagaaaaccagagaagagtattcgattctcagttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctactagagtg 54991852  T
Q  246 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 345  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54991853 tgtgatctatccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 54991952  T
Q  346 tatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||       |||||||||||||||||||    
T  54991953 tatactccaagtttttttcattatacactagtgttcc 54991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 88 - 382
Target Start/End: Complemental strand, 54990686 - 54990392
Alignment:
Q  88 aaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagtttt 187  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| || ||| ||||||||| || ||||||||||    
T  54990686 aaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagtagagaggagagaaaacaagagaagagtatttgattctcagtttt 54990587  T
Q  188 ggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacac 287  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54990586 ggagtgaagaatactatacccgagctctcaatttataaggagaatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaattcacac 54990487  T
Q  288 tttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||    
T  54990486 tttacactagtttctccatccttgtgttaacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacattagtgttcc 54990392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 39999363 - 39999609
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  39999363 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 39999459  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999460 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 39999559  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  39999560 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 39999609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 40004321 - 40004567
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  40004321 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 40004417  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004418 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 40004517  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  40004518 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 54343497 - 54343743
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  54343497 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 54343593  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343594 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 54343693  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54343694 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 54343743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 54348651 - 54348897
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  54348651 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 54348747  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348748 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 54348847  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54348848 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 54348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 152 - 356
Target Start/End: Original strand, 36359664 - 36359868
Alignment:
Q  152 gagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 251  Q
    ||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36359664 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgat 36359763  T
Q  252 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36359764 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatact 36359863  T
Q  352 ccaag 356  Q
    |||||    
T  36359864 ccaag 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 36354436 - 36354682
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||     
T  36354436 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattt 36354532  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36354533 ctgagctctcaatttataaagaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 36354632  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  36354633 ccttgtgttaacattccaaaggctccacaaattcactagtatactccaag 36354682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  335 aaactcactagtatactccaag 356  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 41393858 - 41394005
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  41393958 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 41394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 51019303 - 51019117
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  51019303 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 51019206  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 234  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | ||||||||| |||| |||||||  ||||||||    
T  51019205 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 9763971 - 9763771
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaa-ccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaa 112  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||       | ||||||||| ||||||||||||||||||  ||||||    
T  9763971 gagaataacacctcaatatggttt-cgaaaagtttcgaaaaaaccactctaatat-------ataccactcgagaaaccaaagaaggaggaagaaaagaa 9763880  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| ||||||||||| | || ||| ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||||| | ||||||||    
T  9763879 cggttcgtcaacacaaaccgcggga-gatg-aga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaataccaatcccgagc 9763783  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  9763782 tctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 53797794 - 53797970
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||  ||||||| ||||||||||| |||||| |||| | || |    
T  53797794 gtttcgaaaaaccactctaatatggcacgtagaccactcaaaaaaccaaagaaggaggaagaaaagaacagttcgtcaacacaaaccgaggga-gatg-a 53797891  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| ||| |||||||||||| |||||||    
T  53797892 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 9763420 - 9763273
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  9763320 ataacaactagtatactccaagtttatgccaatatacactagtgttcc 9763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 13695757 - 13695904
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13695857 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 13711370 - 13711517
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13711470 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 41393410 - 41393584
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||    || || ||     
T  41393410 gtttcgaaaaaccactctaatatggttcgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaacc----gatggagat 41393505  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||| || ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  41393506 gag-ggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 47046266 - 47046060
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaa 112  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| ||| ||||||| ||| |||||||||| ||||| ||| ||||||    
T  47046266 gagaataacacctcagtatggttt-cgaaaagtttcgaaaa-ccactctaatatggcacgcagaccacccgagaaaccaaagagggagggaagaaaagaa 47046169  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| || | | |||| | || ||| ||| ||||| |||||| ||||  |||||| |||| ||||||||||||||||| | ||||||||||    
T  47046168 cggttcgtcaacacaacctgaggga-gatg-aga-aggggagaaaaccagagaagatgattcgattctcggttttggagtgaagaatcccattcccgagc 47046072  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  47046071 tctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 4207042 - 4207188
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  4207141 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 4207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 13710833 - 13711010
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaga-aggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtga 143  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||  |||||| |||||||||||| |||||| |||| | ||     
T  13710833 gtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaacacaaaccgaggga-gatg- 13710930  T
Q  144 agagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||| ||| ||||| |||||| ||||| |||||| |||  ||||||||||||||||| | |||||||||||||| |||||||    
T  13710931 aga-aggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 13695327 - 13695503
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||   |||||| |||| ||||||| |||||| |||| | || |    
T  13695327 gtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaatggtttgtcaacacaaaccgaggga-gatg-a 13695424  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| |||||||||||| |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  13695425 ga-aggggagaaaaccagagaagagtattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  335 aaactcactagtatactccaa 355  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 13699067 - 13699113
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699067 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 13699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 21301371 - 21301325
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301371 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21301325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 36357870 - 36357916
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357870 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 36357916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 40002798 - 40002844
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002798 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 40002844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 54346932 - 54346978
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346932 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 54346978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 8981823 - 8981777
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8981823 catcaatggcgtaccctttcccaacaaaaataccattcttagtgatg 8981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 13702945 - 13702991
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13702945 catcagtggcgtaccctttcccaacaaaagtaccattcttagtgatg 13702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 27711468 - 27711836
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711468 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 27711567  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27711568 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 27711667  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711668 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 27711767  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  27711768 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 27711836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 27716588 - 27716930
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716588 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 27716687  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  27716688 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattatcagttttggagtgaagaatactattcccgagct 27716787  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27716788 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaaatttcaattcacactttacactagtttctccatccttgtg 27716887  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
     |||| |||||||||||||||||||||||||||||||||||||    
T  27716888 cttacgttccaaaggctccacaaactcactagtatactccaag 27716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 37409487 - 37409145
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  37409487 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacatagaccactcgataaaccaaagaaggaggaaagaaaaaac 37409388  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37409387 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 37409288  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409287 ctcaatttataaggaggatttatactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 37409188  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37409187 tttacattccaaaggctccacaaactcactagtatactccaag 37409145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 37404366 - 37404026
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37404366 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaataac 37404267  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| ||||||  |||||| ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||    
T  37404266 ggttcgtcaacacaaaccg--ggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgggct 37404169  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404168 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 37404069  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37404068 tttacattccaaaggctccacaaactcactagtatactccaag 37404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 46 - 356
Target Start/End: Complemental strand, 11251041 - 11250731
Alignment:
Q  46 tttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaag 145  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  11251041 tttcgaaaaaccactctaatatgatacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaag 11250942  T
Q  146 agaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtg 245  Q
    ||||||||||| |||||| |||||||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11250941 agaggagagaaaaccagagaagagtattcgattctcaattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctactagagtg 11250842  T
Q  246 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 345  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  11250841 tgtgatctaaccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaactcactgg 11250742  T
Q  346 tatactccaag 356  Q
    |||||||||||    
T  11250741 tatactccaag 11250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 153 - 356
Target Start/End: Complemental strand, 34318043 - 34317840
Alignment:
Q  153 agaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 252  Q
    |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34318043 agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 34317944  T
Q  253 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317943 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 34317844  T
Q  353 caag 356  Q
    ||||    
T  34317843 caag 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 356
Target Start/End: Complemental strand, 36684516 - 36684270
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  36684516 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattc 36684420  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684419 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 36684320  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684319 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 5725365 - 5725512
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  5725465 aaaccaactagtatactccaagttttttccattatacactagtgttcc 5725512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 3585301 - 3585448
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||  ||||||||||||||||       || ||||||||||||||||    
T  3585401 aaaccaactagtatactccaagttttttccaatatacactagtgttcc 3585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 381
Target Start/End: Original strand, 5730771 - 5730917
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttc 381  Q
    ||||  |||||||||||||||        ||||||||||||||||||    
T  5730871 aaaccaactagtatactccaaattttttccattatacactagtgttc 5730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 11387761 - 11387666
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11387761 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaa 11387666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 3584766 - 3584942
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  3584766 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 3584863  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | | ||| |||||||| |||||||    
T  3584864 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 5730270 - 5730446
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  5730270 gtttcgaaaaaccactctaatatggtacacagaccactcgagaaaccaaagaaggaggaataaaagaacggttcgtcaacacaaaccgaggga-gatg-a 5730367  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | | |||||||||||| |||||||    
T  5730368 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 45 - 234
Target Start/End: Complemental strand, 48246613 - 48246427
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  48246613 gtttcaaaaaaccactcttatatggtacgtagaccactcggtaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 48246516  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 234  Q
    || ||| ||||| |||||| ||||| |||||| |||| |||||| |||||||||| | ||| ||||| |||| |||||||  ||||||||    
T  48246515 ga-aggggagaaaaccagagaagaggattcgattctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 356
Target Start/End: Complemental strand, 50959069 - 50959010
Alignment:
Q  297 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaag 50959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 5725144 - 5725221
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtca 122  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||  |||||| |||||||||    
T  5725144 gtttcgaaaaaccactctaatatggtacgcaggccactcgagaaaccaaagaagaaggaagaaaagaatggttcgtca 5725221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 27715000 - 27715046
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715000 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 27715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 37405954 - 37405908
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  37405954 catcagtggcgtaccctttcccaacaaaattatcattcttagtgatg 37405908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 5728674 - 5728721
Alignment:
Q  386 catcagtggcgtaccctttcccaac-aaaaataccattcttagtgatg 432  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5728674 catcagtggcgtaccctttcccaacaaaaaatatcattcttagtgatg 5728721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 11251063 - 11251033
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaa 44  Q
    |||||||||||||||||||||||||||||||    
T  11251063 gagaataacacctcaatatggttttcgaaaa 11251033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 22703316 - 22702948
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22703316 gagaataacacctcaatatggttttcgaaaagtttcaaaaaaccactctaatatggtacgtagaccactcaataaaccaaagaaggaggaaagaaagaac 22703217  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22703216 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 22703117  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703116 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 22703017  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  22703016 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 22702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 21401886 - 21402254
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21401886 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21401985  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| ||||||| |||||| ||||||||||||||| |||| | |||||||||||| ||| |||||| |||||| ||||||||||||| ||||    
T  21401986 ggttcgtcaacacaaaccgcaggagggagaagagaggagagaaaaccaaagaagagtattcgattcttagtttttgagtgatgaatactattcccaagct 21402085  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402086 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 21402185  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||    
T  21402186 tttacattccaaaggctccacaaactcactactatactccaagtttttttcattatacactagtgttcc 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 382
Target Start/End: Complemental strand, 29491187 - 29490812
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaa-ccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29491187 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaaaaaagaa 29491088  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaag-aatact----attcc 207  Q
    ||||||||||||| |||||||||||||| |||||||||||| || | |||| ||||||||| || ||||||||||||||||||  || |||    |||      
T  29491087 cggttcgtcaacacaaaccgcgggagggagaagagaggagataaaatcagagaagagtatttgattctcagttttggagtgaaccaaaactgagtattta 29490988  T
Q  208 --cgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctcca 305  Q
      | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29490987 aacca-ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctcca 29490889  T
Q  306 tccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||    
T  29490888 tccttgtgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 29490812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 107 - 382
Target Start/End: Complemental strand, 22698044 - 22697772
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  22698044 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 22697948  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697947 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 22697848  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  22697847 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 22697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 21396844 - 21396983
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21396844 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 21396943  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggaga 153  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  21396944 ggttcgtcaacacaaaccgcgggagggagaagagaggaga 21396983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 34376064 - 34376270
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||  |||||||    
T  34376064 gagaataacacctcagtatggttt-cgaaaagtttcgaaaaaccactctaatatggcacgcagaccactcgagaaaccaaagagggaggaagaaaagaac 34376162  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||| |||| | || ||| ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | |||||||||||    
T  34376163 ggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagct 34376259  T
Q  214 ctcaatttata 224  Q
    ||| |||||||    
T  34376260 ctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 24191333 - 24191126
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaa 112  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||    
T  24191333 gagaataacacctcagtatggttt-cgaaaagtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagagggaggaaagaaaaaaa 24191235  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| |||||| |||| | || ||| ||| ||||| |||||| ||||| |||||| |||  ||||||||||||||||| | ||||||||||    
T  24191234 cggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagc 24191138  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  24191137 tctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 24192430 - 24192223
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaa 112  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| ||| ||    
T  24192430 gagaataacacctcagtatggttt-cgaaaagtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagagggaggaaagaaaaaaa 24192332  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| |||||| |||| | || ||| ||| ||||| |||||| ||||| |||||| |||  ||||||||||||||||| | ||||||||||    
T  24192331 cggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagc 24192235  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  24192234 tctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 2817548 - 2817401
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  2817448 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 2817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 34142781 - 34142928
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34142881 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 34155397 - 34155544
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34155497 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 34142225 - 34142418
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaa 112  Q
    ||||||||||||||| |||||||| ||||||  |||||||||||||||||||||||| || |||| |||||| |||||||||||||||| ||| ||||||    
T  34142225 gagaataacacctcagtatggttt-cgaaaa--ttcgaaaaaccactctaatatggttcgcagacaactcgagaaaccaaagaaggagggaagaaaagaa 34142321  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| |||||| |||| | || ||| ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | ||||||||||    
T  34142322 cggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 34154841 - 34155034
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaa 112  Q
    ||||||||||||||| |||||||| ||||||  |||||||||||||||||||||||| || |||| |||||| |||||||||||||||| ||| ||||||    
T  34154841 gagaataacacctcagtatggttt-cgaaaa--ttcgaaaaaccactctaatatggttcgcagacaactcgagaaaccaaagaaggagggaagaaaagaa 34154937  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| |||||| |||| | || ||| ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | ||||||||||    
T  34154938 cggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 31981728 - 31981904
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||   ||||||||||||||||||| |||||| |||| | || |    
T  31981728 gtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 31981825  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| |||||||||||| |||| ||||||||||||||||||| | |||||||||||| |||||||    
T  31981826 ga-aggggagaaaaccagagaagagtattcgattctcggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 6727924 - 6727777
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  6727824 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 6727777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 34376464 - 34376611
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34376564 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 2818077 - 2817901
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  2818077 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaacaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 2817980  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||  |||||||||| ||||||   |||||||||||||| |||||||    
T  2817979 ga-aggggagaaaaccagagaagaggattcgattcttggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 24190802 - 24190654
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 333  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  334 caaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    || |   ||||||||||||||||       || ||||||||||||||||    
T  24190702 cataacaactagtatactccaagtttttgccaatatacactagtgttcc 24190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 31983475 - 31983622
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  31983575 ataaaaactagtatactccaagtttttgccaatatacactagtgttcc 31983622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 22699784 - 22699738
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699784 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 22699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 6728336 - 6728285
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaga 96  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  6728336 gtttcgaaaaaccagtctaatatggcacgtagaccactcgagaaaccaaaga 6728285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 6728246 - 6728193
Alignment:
Q  171 attcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    |||||| |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  6728246 attcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 17510203 - 17510571
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510203 gagaataacacctcaatatggttttcaaaaaatttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 17510302  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17510303 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 17510402  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510403 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 17510502  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  17510503 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 17510571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 17505098 - 17505440
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505098 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 17505197  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17505198 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 17505297  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  17505298 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacaatagtttttccatccttgtg 17505397  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  17505398 tttacattccaaaggctccacaaactcactagtatattccaag 17505440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 42019718 - 42020086
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  42019718 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtaaaccactcgataaaccaaagaaggaggaaagaaagaat 42019817  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42019818 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 42019917  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  42019918 ctcaatttataaggaggatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaattcacattttacattagtttctccatccttgtg 42020017  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  42020018 tttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 42020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 43579805 - 43580147
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43579805 gagaataacacctcaatatagttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcaataaaccaaagaaggaggaaagaaagaac 43579904  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| | |||| |||||||||||| |||||||||||| ||||| |||||||||||||||||    
T  43579905 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaatcagagaagagtattcgattctcagttttggtgtgaaaaatactattcccgagct 43580004  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580005 ctcaatttataaggaggatttctactagagtatgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 43580104  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43580105 tttacattccaaaggctccacaaactcactagtatactccaag 43580147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 41858738 - 41859071
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41858738 gagaataacacctcaatatggttttcgaaaagtttcaaaaaaccactctaatatggtatgtagaccactcgataaaccaaagaatgaggaaagaaagaac 41858837  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||       ||||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41858838 ggttcgtcaacacaaaccgcgg-------aagagagaagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 41858930  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  41858931 ctcaatttataaggagaatttctactagagtgt--gatctacccgatgtgggacatagaattttcaattcacactttacactaatttttccatccttgtg 41859028  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41859029 tttacattccaaaggctccacaaactcactagtatactccaag 41859071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 82 - 382
Target Start/End: Original strand, 42024566 - 42024866
Alignment:
Q  82 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctc 181  Q
    |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||    
T  42024566 tcgaaaaaccaaagaaggaggaaagaaagaacgattcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 42024665  T
Q  182 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 281  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42024666 aattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaat 42024765  T
Q  282 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 381  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||    
T  42024766 tcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactagtatacttcaagtttttttcattatacactagtgttc 42024865  T
Q  382 c 382  Q
    |    
T  42024866 c 42024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 41853693 - 41853842
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41853693 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 41853792  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccaga 163  Q
    ||||||| || | |||||||||||||| |||||||| |||||| ||||||    
T  41853793 ggttcgttaaaacaaaccgcgggagggagaagagagcagagaaaaccaga 41853842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 246 - 356
Target Start/End: Original strand, 41853846 - 41853956
Alignment:
Q  246 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 345  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  346 tatactccaag 356  Q
    |||||||||||    
T  41853946 tatactccaag 41853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 36253971 - 36254177
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||  |||||||    
T  36253971 gagaataacacctcaatatggttt-cgaaaagtttcgaaaaaccactctaatatggtacgcaaaccactcgagaaaccaaagaaggaggaagaaaagaac 36254069  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||| | |||| | || ||| ||| ||||| || ||| ||||| |||||| |||| ||||||||||||||||| | |||||| ||||    
T  36254070 ggttcgtcaacacaaactgaggga-gatg-agaaagg-gagaaaactagagaagaggattcgattctcggttttggagtgaagaatcccattcccaagct 36254166  T
Q  214 ctcaatttata 224  Q
    ||| |||||||    
T  36254167 ctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  335 aaactcactagtatactccaa 355  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 1413981 - 1413806
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  1413981 gtttcgaaaaaccactctaatatggta-gcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 1413885  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||||||||| |||||| |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  1413884 ga-aggggagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 24770752 - 24770605
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  24770652 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 24770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 26709688 - 26709804
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26709688 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26709787  T
Q  335 aaactcactagtatact 351  Q
    ||||  |||||||||||    
T  26709788 aaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 26979422 - 26979538
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26979422 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26979521  T
Q  335 aaactcactagtatact 351  Q
    ||||  |||||||||||    
T  26979522 aaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 325  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 24776739 - 24776563
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||   ||||||||||||||||||| |||||| |||| | || |    
T  24776739 gtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 24776642  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| |||||||||||| |||| |||||||||| |||||||| | ||| |||||||| |||||||    
T  24776641 ga-aggggagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 26709269 - 26709444
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||  |||||| ||||| |||||| |||||| |||| | || |    
T  26709269 gtttcgaaaaaccactctaatatggtacc-agaccactcgagaaaccaaagaaggaggaagaaaagaatggttcatcaacacaaaccgaggga-gatg-a 26709365  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||| | ||||| |||| | |||||||||||||||||||||| | | |||||||||||| |||||||    
T  26709366 ga-aggggagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 26979003 - 26979178
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||  |||||| ||||| |||||| |||||| |||| | || |    
T  26979003 gtttcgaaaaaccactctaatatggtacc-agaccactcgagaaaccaaagaaggaggaagaaaagaatggttcatcaacacaaaccgaggga-gatg-a 26979099  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||| | ||||| |||| | |||||||||||||||||||||| | | |||||||||||| |||||||    
T  26979100 ga-aggggagaaaaccaaagaagaggattcaattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 24771284 - 24771108
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||| |||| |||| | ||| | ||||| |||||||||||||||||   ||||||||||||||||||| |||||| |||| | || |    
T  24771284 gtttcgaaaaaccactcaaatacggtatgcagatcgctcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 24771187  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| |||||| || || |||  |||||||||| |||||||| | ||| |||||||| |||||||    
T  24771186 ga-aggggagaaaaccagagaagagtgtttgattcttggttttggagtaaagaataccaatcctgagctctctatttata 24771108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 17508630 - 17508676
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508630 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 41857149 - 41857195
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857149 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 41857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 42023542 - 42023588
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 24772895 - 24772849
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24772895 catcagtggcgtaccttttcccaacaaaaataccattcttagtgatg 24772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 3708 - 4050
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  3708 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacatagaccactcgataaaccaaagaaggaggaaagaaaaaac 3807  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3808 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 3907  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3908 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 4007  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4008 tttacattccaaaggctccacaaactcactagtatactccaag 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 2120 - 2166
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 382
Target Start/End: Original strand, 40392464 - 40392832
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40392464 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 40392563  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| | |||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  40392564 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaatcagagaaaagtattcgattctcagttttggagtgaagaatactattcccgagct 40392663  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40392664 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttatg 40392763  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  40392764 tttacattgcaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 40392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 40518422 - 40518075
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaa-gaaggaggaaagaaagaa 112  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  40518422 gagaataacacctcaatatggttttcaaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaagaaggaggaa-gaaagaa 40518324  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  40518323 cggttcgtcaacacaaaccgctggagggagaagagaggagagaaaacaagagaagagtattcgattctcagttttggagtgaagaatactattcacgagc 40518224  T
Q  213 tctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-gatgtgggacataaaattttcaattcacactttacactagtttctccatc 307  Q
    |||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40518223 tctcaatttattaataaggaggatttctactagagtgtgtgatctaccccgatgtgggacataaaattttcaattcacactttacactagtttctccatc 40518124  T
Q  308 cttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  40518123 cttgtgtttatattccaaaggctccacaaactcactattatactccaag 40518075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 356
Target Start/End: Complemental strand, 42728421 - 42728175
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  42728421 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 42728325  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728324 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 42728225  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42728224 ccttgtgtttacattccaaaggctccacaaactcactagtaaactccaag 42728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 152 - 355
Target Start/End: Complemental strand, 42723210 - 42723007
Alignment:
Q  152 gagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 251  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723210 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42723111  T
Q  252 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42723110 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42723011  T
Q  352 ccaa 355  Q
    ||||    
T  42723010 ccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 44096596 - 44096842
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  44096596 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattc 44096692  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096693 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 44096792  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  44096793 ccttttgtttacattccaaatgctccacaaactcactagtatactccaag 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 165 - 356
Target Start/End: Complemental strand, 44754352 - 44754161
Alignment:
Q  165 aagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 264  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754352 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44754253  T
Q  265 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754252 gacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 165 - 356
Target Start/End: Complemental strand, 44759518 - 44759327
Alignment:
Q  165 aagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 264  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759518 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44759419  T
Q  265 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44759418 gacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 165 - 353
Target Start/End: Original strand, 40519929 - 40520122
Alignment:
Q  165 aagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-ga 259  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  40519929 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctaccccga 40520028  T
Q  260 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520029 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 40520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 4163042 - 4162895
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||  ||||||||||||||||       |||||||||| ||||||||    
T  4162942 aaaccaactagtatactccaagttttttccattatacaccagtgttcc 4162895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 28751168 - 28751021
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  28751068 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 28751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 4163507 - 4163331
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  4163507 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 4163410  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | | |||||||||||| |||||||    
T  4163409 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 28751659 - 28751483
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  28751659 gttttgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 28751562  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||| | ||||| |||||| |||| |||||||||||||||||   |||||||||||||| |||||||    
T  28751561 ga-aggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 42724986 - 42724940
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724986 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 44756138 - 44756092
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756138 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 44756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 17368864 - 17369199
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17368864 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 17368963  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17368964 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 17369063  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369064 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 17369163  T
Q  314 tttacattccaaaggctccacaaactcactagtata 349  Q
    |||||||||||||||||||||||||  |||||||||    
T  17369164 tttacattccaaaggctccacaaaccaactagtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 356
Target Start/End: Original strand, 55128935 - 55129276
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaac 113  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55128935 gagaataacacctcaacatggttttcgaaaagtttcgaaaaaccactctaatatggtatgtagaccactcgataaaccaaagaaggaggaaagaaagaac 55129034  T
Q  114 ggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagct 213  Q
    |||||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55129035 ggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagct 55129134  T
Q  214 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55129135 ctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat-cttgtg 55129233  T
Q  314 tttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55129234 tttacattccaaaggctccacaaactcactagtatactccaag 55129276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 107 - 382
Target Start/End: Complemental strand, 20090463 - 20090191
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  20090463 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 20090367  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090366 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 20090267  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||  ||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  20090266 cctgatgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 20090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 107 - 382
Target Start/End: Complemental strand, 20095588 - 20095316
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  20095588 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 20095492  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095491 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 20095392  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||  ||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  20095391 cctgatgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 20095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Complemental strand, 15762831 - 15762585
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  15762831 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 15762735  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762734 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 15762635  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15762634 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Complemental strand, 15767992 - 15767746
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  15767992 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 15767896  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767895 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 15767796  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15767795 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 15767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 3481796 - 3481649
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  3481696 aaactcactagtatactccaagtttttttcattatacactagtgttcc 3481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 34128558 - 34128437
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  335 aaactcactagtatactccaag 356  Q
    |||   ||||||||||||||||    
T  34128458 aaatcaactagtatactccaag 34128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  335 aaactcactagtatactccaag 356  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 3482373 - 3482166
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaga-aggaggaaagaaagaa 112  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| || || ||||| | ||||||||  ||||||    
T  3482373 gagaataacacctcagtatggttt-cgaaaagtttcgaaaaaccactctaatatggcacgtagaccacttgagaatccaaatagaggaggaagaaaagaa 3482275  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| |||||| |||| | || ||| ||| ||||| |||||||||||| |||||| |||| ||||||||||||||||| | ||||||||||    
T  3482274 cggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagataagaggattcgattctcggttttggagtgaagaatcccattcccgagc 3482178  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  3482177 tctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 30341351 - 30341204
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  30341251 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 30341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 17358003 - 17358179
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||| |||||| |||| | || |    
T  17358003 gtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaagaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 17358100  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||||||||||||||||||||| | | |||||||||||| |||||||    
T  17358101 ga-aggggagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 34129099 - 34128923
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||| |||||| |||| | || |    
T  34129099 gtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggatgaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 34129002  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||||||||||||||||||||| | | |||||| ||||| |||||||    
T  34129001 ga-aggggagaaaaccagagaagaggattcgattctcagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 4117550 - 4117345
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaa 112  Q
    ||||||||||||||| |||||||| ||||||  |||||||||||||| ||||||||| | |||||||||||| |||||||||||||||| ||| ||||||    
T  4117550 gagaataacacctcagtatggttt-cgaaaa--ttcgaaaaaccactgtaatatggttcatagaccactcgagaaaccaaagaaggagggaagaaaagaa 4117454  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||||||||||||| |||||| |||| | || ||| ||| ||||| |||| | ||||| |||||| |||| ||||||||||||||||| | ||||||||||    
T  4117453 cggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 4117357  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  4117356 tctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 10321608 - 10321784
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  10321608 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 10321705  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| ||| || ||||| |||| | |||| ||||||||||||||||| | | |||||||||||| |||||||    
T  10321706 ga-aggggagaaaacctgagaagaggattcaattctcggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 54270809 - 54270986
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaag-aaagaacggttcgtcaacataaaccgcgggagggtga 143  Q
    |||| |||||||||||||||||||||  | ||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| |||| | ||     
T  54270809 gttttgaaaaaccactctaatatggtttgcagaccactcgagaaaccaaagaaggagggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg- 54270906  T
Q  144 agagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||| ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  54270907 aga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 3476876 - 3476699
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaga-aggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtga 143  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||  |||||| |||||||||||| |||||| |||| | ||     
T  3476876 gtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaacacaaaccgaggga-gatg- 3476779  T
Q  144 agagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||| ||| ||||| |||||| ||||| |||||| |||   |||||||||||||||| | |||||||||||||| |||||||    
T  3476778 aga-aggggagaaaaccagagaagaggattcgattcttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 3478485 - 3478439
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478485 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 3478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 15764557 - 15764511
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764557 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 17362634 - 17362680
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362634 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 17367276 - 17367322
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367276 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 20092188 - 20092142
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092188 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 20092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 30338578 - 30338506
Alignment:
Q  152 gagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30338578 gagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 107 - 382
Target Start/End: Original strand, 33238296 - 33238568
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  33238296 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 33238392  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238393 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 33238492  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  33238493 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 33238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 152 - 382
Target Start/End: Original strand, 33243515 - 33243745
Alignment:
Q  152 gagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 251  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243515 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33243614  T
Q  252 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33243615 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatact 33243714  T
Q  352 ccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||       |||||||||||||||||||    
T  33243715 ccaagtttttttcattatacactagtgttcc 33243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 47994094 - 47994340
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  47994094 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 47994190  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994191 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 47994290  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994291 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 47999269 - 47999515
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  47999269 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 47999365  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47999366 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccat 47999465  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  47999466 ccttatgtttacattccaaaggctccacaaactcactaatatactccaag 47999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 21080468 - 21080321
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  21080368 aaaccaactagtatactccaagttttttccattatacactagtgttcc 21080321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  335 aaactcactagtatactccaag 356  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 2234560 - 2234384
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  2234560 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 2234463  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||||||| |||||||||||| |||||||    
T  2234462 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 32212112 - 32211965
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  32212012 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 32211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 42572600 - 42572747
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42572700 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42572747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 356
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 12935084 - 12935231
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  12935184 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 19309023 - 19308876
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  19308923 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 19308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 43893003 - 43893210
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaga-aggaggaaagaaagaa 112  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||  |||||||  ||||||    
T  43893003 gagaataacacctcggtatggttt-cgaaaagtttcgaaaaaccactctagtatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaa 43893101  T
Q  113 cggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    || |||||||||| |||||| |||| | || ||| ||| ||||| |||||| ||||| |||||| ||||  |||||||||||||||| | ||||||||||    
T  43893102 cgattcgtcaacacaaaccgaggga-gatg-aga-aggggagaaaaccagagaagaggattcgattctcgattttggagtgaagaatcccattcccgagc 43893198  T
Q  213 tctcaatttata 224  Q
    |||| |||||||    
T  43893199 tctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 47176643 - 47176496
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  47176543 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 47176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 12934562 - 12934738
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||  |||||||||||| |||||| |||||| |||| | || |    
T  12934562 gtttcgaaaaaccactcaaatatggttcgtagaccactcgagaaaacaaagaaggaggaagaaaagaacggttcatcaacacaaaccgaggga-gatg-a 12934659  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  12934660 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 17495568 - 17495744
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  17495568 gtttcaaaaaaccactcttatatggtacgtagaccactcaagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 17495665  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||| | |||| |||||||||| |||||| | |||||||||||||| |||||||    
T  17495666 ga-aggcgagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 17557646 - 17557470
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  17557646 gtttcaaaaaaccactcttatatggtacgtagaccactcaagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 17557549  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||| | |||| |||||||||| |||||| | |||||||||||||| |||||||    
T  17557548 ga-aggcgagaaaaccagagaagaggattcaattctcggttttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 21080969 - 21080793
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||| ||||||||||||||||||||||||||||||||  | ||||||||||||||||||  ||||||||||||||||||| ||||||  ||| | || |    
T  21080969 gtttcaaaaaaccactctaatatggtacgtagaccacttaagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg-aggaagatg-a 21080872  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| ||||||||||| |||||||||| | | |||||||||||| |||||||    
T  21080871 ga-aggggagaaaaccagagaagaggattcgattctcagttttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 42572110 - 42572286
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||   ||||||||||||||||||| |||||| |||| | || |    
T  42572110 gtttcgaaaaaccattcaaatatggttcgtagaccactcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 42572207  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  42572208 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  242 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 341  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  342 ctagtatactccaag 356  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  242 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 341  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  342 ctagtatactccaag 356  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 382
Target Start/End: Original strand, 43893542 - 43893689
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  43893642 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 43893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 16539342 - 16539166
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||| |||| | || |    
T  16539342 gtttcgaaaaaccactctaatatgacacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgaggga-gatg-a 16539245  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || | | ||||| |||||| ||||| |||  | |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  16539244 ga-atgggagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Original strand, 16626320 - 16626496
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||| |||||| |||| | || |    
T  16626320 gtttcgaaaaaccactctaatatgacacgtagaccactcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccgaggga-gatg-a 16626417  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || | | ||||| |||||| ||||| |||  | |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  16626418 ga-atgggagaaaaccagagaagaggatttaattctcggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 19309541 - 19309365
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||   ||||||| ||||||||||| |||||| |||| | || |    
T  19309541 gtttcgaaaaaccagtcaaatatggttcgtagaccactcgagaaaccaaagaaggaggaggaaaagaacagttcgtcaacacaaaccgaggga-gatg-a 19309444  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| ||||| ||| || |||| ||||||||||||||||| | |||||||||||||| |||||||    
T  19309443 ga-aggggagaaaaccagagaagaggatttgattctcggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 32212584 - 32212419
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaag-aaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtga 143  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||||| |||||| |||||| |||| | ||     
T  32212584 gtttcgaaaaaccactccaatatggtacgaagaccactcgagaaaccaaagaaaggaggaagaaaagaacggttcatcaacacaaaccgaggga-gatg- 32212487  T
Q  144 agagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagc 212  Q
    ||| ||| ||||| | |||| ||||| |||||| |||| ||||||||||||||||| | ||||||||||    
T  32212486 aga-aggggagaaaatcagagaagaggattcgattctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 47544828 - 47544749
Alignment:
Q  303 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttcc 47544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 33241732 - 33241778
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241732 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 33241778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 47997529 - 47997575
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997529 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 47997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 47177069 - 47177024
Alignment:
Q  14 gagaataacacctcaatatggttttcgaaaagtttcgaaaaaccact 60  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  47177069 gagaataacacctcagtatggttt-cgaaaagtttcgaaaaaccact 47177024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 47176976 - 47176904
Alignment:
Q  152 gagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||||| |||||| ||||| |||||| | || |||||||||||||||||   |||||||||||||| |||||||    
T  47176976 gagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 31839 - 32085
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31839 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattc 31935  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31936 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 32035  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32036 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 26667 - 26913
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  26667 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattc 26763  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26764 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 26863  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26864 ccttttgtttacattccaaaggctccacaaactcactagtatactccaag 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 30102 - 30148
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30102 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 30148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 3318 - 3564
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  3318 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 3414  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3415 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctaccggatgtgggacataaaattttcaattcacactttacactagtttctccat 3514  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3515 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 356
Target Start/End: Complemental strand, 81217 - 80971
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  81217 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 81121  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  81120 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctaccggatgtgggacataaaattttcaattcacactttacactagtttctccat 81021  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81020 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 32010820 - 32011066
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  32010820 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 32010916  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010917 ccgagctctcaatttataaggaggatttctactagagtgtatgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 32011016  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32011017 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 32011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 107 - 356
Target Start/End: Original strand, 32015994 - 32016240
Alignment:
Q  107 aaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattc 206  Q
    |||||||| |||||||||| ||| ||||||||  ||| || ||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  32015994 aaagaacgattcgtcaacacaaatcgcgggaga-tga-ga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 32016090  T
Q  207 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016091 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccat 32016190  T
Q  307 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 356  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32016191 ccttgtgtttacattccaaaggctccacaaattcactagtatactccaag 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 127 - 382
Target Start/End: Complemental strand, 2165650 - 2165394
Alignment:
Q  127 aaaccgcgggagggtgaagagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataag 226  Q
    |||||||||||||| ||||||| ||||||| || ||| ||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2165650 aaaccgcgggagggagaagagatgagagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataag 2165551  T
Q  227 gaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaa 325  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2165550 gaggatttctactagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaa 2165451  T
Q  326 aggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    || |||||||||||||||||||||||||||        |||||||||||||||||||    
T  2165450 agactccacaaactcactagtatactccaaaattttttcattatacactagtgttcc 2165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 43998693 - 43998546
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagtttttttcattatacactagtgttcc 43998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 17955281 - 17955134
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    |||   |||||||||||| |||       |||||||||||||||||||    
T  17955181 aaaacaactagtatactctaagtcttttccattatacactagtgttcc 17955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 24884878 - 24885064
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  24884878 gtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 24884975  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 234  Q
    || ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | |||||||||||||| |||||||  ||||||||    
T  24884976 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  335 aaactcactagtatactccaag 356  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 42513995 - 42513848
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42513895 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 43999160 - 43998984
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || |    
T  43999160 gtttcgaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 43999063  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| | |||| ||||| |||||| |||||||||| |||| ||||||   | |||||||||||| |||||||    
T  43999062 ga-aggggagaaaatcagagaagaggattcgattctcagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 21644011 - 21643835
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    |||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |||||| |||||| |||||   | |    
T  21644011 gtttcgaaaagccactataatatggtacgcagaccactcgagaaaccaaagaaggaggaaaaaaagaacggttcatcaacacaaaccgagggagatggga 21643912  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
       ||| ||||| |||||| ||||| |||||| |||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643911 ---aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 21643571 - 21643395
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||| || |||| | || |    
T  21643571 gtttcgaaaagccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaatcgaggga-gatg-a 21643474  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||| | ||||| |||||| |||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643473 ga-aggggagaaaaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 21641684 - 21641520
Alignment:
Q  57 cactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaa 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||| | || ||| ||| |||||    
T  21641684 cactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaaccgaggga-gatg-aga-aggggagaa 21641588  T
Q  157 gaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
     |||| | ||||| |||||| ||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641587 aaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 21642059 - 21641895
Alignment:
Q  57 cactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaa 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||| | || ||| ||| |||||    
T  21642059 cactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaaccgaggga-gatg-aga-aggggagaa 21641963  T
Q  157 gaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
     |||| | ||||| |||||| ||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641962 aaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 21642434 - 21642270
Alignment:
Q  57 cactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaa 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||| |||| | || ||| ||| |||||    
T  21642434 cactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaaccgaggga-gatg-aga-aggggagaa 21642338  T
Q  157 gaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
     |||| | ||||| |||||| ||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642337 aaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 21643184 - 21643020
Alignment:
Q  57 cactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaa 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || ||| ||| |||||    
T  21643184 cactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaa 21643088  T
Q  157 gaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
     |||| | ||||| |||||| |||| ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643087 aaccaaagaagaggattcgattctcggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 21642809 - 21642645
Alignment:
Q  57 cactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaagagaggagagaa 156  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||| |||| | || ||| ||| |||||    
T  21642809 cactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgaggga-gatg-aga-aggggagaa 21642713  T
Q  157 gaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
     |||| | ||||| |||||| ||||  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642712 aaccaaagaagaggattcgattctcgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 325  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 17955719 - 17955626
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggag 138  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  |||||||| |||||||||| |||||| |||||    
T  17955719 gtttcgaaaaaccactctaatatggtacgcagaccactcgagaaaccaaagaaggaggaagaaaagaacgattcgtcaacacaaaccgagggag 17955626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 21645620 - 21645574
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645620 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 32014255 - 32014301
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014255 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 32014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 42514304 - 42514245
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaa 104  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||||    
T  42514304 gtttcgaaaaaccactctaatatagtacgcagaccactcgagaaaacaaagaaggaggaa 42514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 42514245 - 42514182
Alignment:
Q  153 agaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctc 216  Q
    |||| |||||| ||||| |||||| |||| |||||||||||||||||   ||||||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 19434003 - 19434043
Alignment:
Q  388 tcagtggcgtaccctttcccaacaaaaataccattcttagt 428  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19434003 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19434043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 19570152 - 19570192
Alignment:
Q  388 tcagtggcgtaccctttcccaacaaaaataccattcttagt 428  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19570152 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19570192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 8681 - 8534
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  8581 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 8534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 9138 - 8962
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||  ||||||| ||||||||||| |||||| |||| | || |    
T  9138 gtttcgaaaaaccactctaatatggtacgcaaaccactcgagaaaccaaacaaggaggaagaaaagaacagttcgtcaacacaaaccgaggga-gatg-a 9041  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| || ||| ||||| |||||| ||||  |||||||||||||||| | |||||||||||||| |||||||    
T  9040 ga-aggggagaaaactagagaagaggattcgattctcgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 45 - 234
Target Start/End: Original strand, 37175 - 37361
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||  ||| | || |    
T  37175 gtttcaaaaaaccactctaatatggtacgtagaccactcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg-aggaagatg-a 37272  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 234  Q
    || ||| ||||| |||||| ||||| |||||| |||| |||||||||||||||||   |||||||||||||| |||||||  ||||||||    
T  37273 ga-aggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttaca 293  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 235 - 382
Target Start/End: Complemental strand, 13133 - 12986
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 334  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  335 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 382  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13033 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12986  T

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Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  235 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 325  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

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Target: scaffold0166; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 13670 - 13493
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaaga-aggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtga 143  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||  |||||||  |||||| |||||||||||| |||||| |||| | ||     
T  13670 gtttcgaaaaaccactctaatatggcacgtagaccactcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaacacaaaccgaggga-gatg- 13573  T
Q  144 agagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    ||| ||| ||||| |||||| ||||| |||||| |||  ||||||||||||||||| | |||||||||||||| |||||||    
T  13572 aga-aggggagaaaaccagagaagaggattcgattcttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

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Target: scaffold0166; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 19122 - 18946
Alignment:
Q  45 gtttcgaaaaaccactctaatatggtacgtagaccactcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggtgaa 144  Q
    ||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||||||||   ||||||||||||||||||| |||||| |||| | || |    
T  19122 gtttcgaaaaaccactcaaatacggtacgcagaccgctcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccgaggga-gatg-a 19025  T
Q  145 gagaggagagaagaccagataagagtattcgactctcagttttggagtgaagaatactattcccgagctctcaatttata 224  Q
    || ||| ||||| |||||| |||||||||||| |||| |||||||||| |||||||| | ||| |||||||| |||||||    
T  19024 ga-aggggagaaaaccagagaagagtattcgattctcggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

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Target: scaffold0166; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Complemental strand, 15279 - 15233
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15279 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15233  T

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Target: scaffold0165 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 15542 - 15588
Alignment:
Q  386 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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