View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2972_low_8 (Length: 413)

Name: NF2972_low_8
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2972_low_8
NF2972_low_8
[»] chr6 (1 HSPs)
chr6 (1-390)||(18239592-18239978)
[»] chr7 (1 HSPs)
chr7 (36-336)||(26982115-26982414)
[»] chr5 (6 HSPs)
chr5 (1-173)||(6637923-6638097)
chr5 (227-384)||(6637358-6637511)
chr5 (1-186)||(7126394-7126581)
chr5 (212-286)||(24181924-24181998)
chr5 (72-133)||(18680145-18680206)
chr5 (213-270)||(7126311-7126368)
[»] chr4 (1 HSPs)
chr4 (83-290)||(26014901-26015107)
[»] chr2 (3 HSPs)
chr2 (82-358)||(37612966-37613243)
chr2 (75-151)||(15127816-15127892)
chr2 (74-151)||(21470077-21470154)
[»] chr8 (3 HSPs)
chr8 (228-396)||(36045950-36046115)
chr8 (94-276)||(43064891-43065073)
chr8 (92-181)||(36046121-36046210)
[»] chr3 (1 HSPs)
chr3 (251-393)||(39181775-39181915)


Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 18239978 - 18239592
Alignment:
Q  1 aggtaggcgtggtgtcttacatgatgaggattctctgtgtttttggttgtggcgaggtggaatcggttcaccatttgtttctaaattgtaatatttttgg 100  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| ||  |  |||||||||||||||||||||| |||||||||||||||||||||||    
T  18239978 aggtaggcgtggtgtcttacttgatgaggattctttgtgtttttggctg--gtaaggtggaatcggttcaccattt-tttctaaattgtaatatttttgg 18239882  T
Q  101 ctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcattttcaccattaggcttgtttgtctggccgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18239881 ctctctatggtacttggttcgtgattgggtggggttttcatcagttgacctgaattctatagtggatcattttcaccattaggcttgtttgtctggccgt 18239782  T
Q  201 ctaaaaacacaacaatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgataggatctttaataataaagtaaaat 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18239781 ctaaaaacacgacaatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgataggatctttaataataaagtaaaat 18239682  T
Q  301 ctattcctcaggtgttggaaaatgtcaagtacttattgacatggtggctcaagcaaaaaatgttgtaaatgtttctaatgagtttgttgg 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18239681 ctattcctcaggtgttggaaaatgtcaagtacttattgacatggtggctcaagcaaaaaatgttgtaaatgtttctaatgagtttgttgg 18239592  T

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Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 336
Target Start/End: Original strand, 26982115 - 26982414
Alignment:
Q  36 tgtgtttttggttgtggcgaggtggaatcggttcaccatttgtttctaaattgtaatatttttggctctctatggtacttggttcgtgattgggtggggt 135  Q
    ||||||| ||| ||||| | ||||||||||||||||| ||||||| ||| ||||||||||||||| |  ||||||||||| ||||||||||||||||||     
T  26982115 tgtgtttctggatgtggtggggtggaatcggttcaccgtttgtttttaacttgtaatatttttggtttgctatggtactt-gttcgtgattgggtggggg 26982213  T
Q  136 tttcattagttgacccgaattctatagtggatcattttcaccattaggcttgtttgtctggccgtctaaaaacacaacaatcttttattcacttattgtg 235  Q
    | ||   |||||| || ||||||||||| |||||||| || ||||| |||| ||| ||  |  |||   ||| | |||||||||||||   |||||||||    
T  26982214 tctcggcagttgatccaaattctatagtagatcatttccatcattatgcttatttatcatgtggtccgcaaaaataacaatcttttatgtgcttattgtg 26982313  T
Q  236 gcttgctacggtttgggtgattttgcgagaaagaaatgataggatctttaataataaagtaaaatctattcctcaggtgttggaaaatgtcaagtactta 335  Q
    ||||||||| ||||||| |||||  |  |||||||||||||| ||||||||| |||| | ||||| |||  ||||  ||||||| || |||||||| |||    
T  26982314 gcttgctacagtttgggagatttgacatgaaagaaatgatagaatctttaattataaggcaaaatttatgtctcacttgttggataaggtcaagtattta 26982413  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 6638097 - 6637923
Alignment:
Q  1 aggtaggcgtggtgtcttacatgatgaggattctct--gtgtttttggttgtggcgaggtggaatcggttcaccatttgtttctaaattgtaatattttt 98  Q
    ||||||||||||||  |||| |||||||||||||||  |||||||||||||||| | |||| |||||||||||||||| ||| |||||||||||||| ||    
T  6638097 aggtaggcgtggtgagttacttgatgaggattctctatgtgtttttggttgtggtgcggtgaaatcggttcaccatttatttttaaattgtaatattgtt 6637998  T
Q  99 ggctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcatttt 173  Q
     ||  ||||||||||||||||||||||||| | ||| |||| | |||||| | | ||||||||||| || |||||    
T  6637997 tgcattctatggtacttggttcgtgattggattggggtttcgtcagttgatcaggattctatagtgaataatttt 6637923  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 227 - 384
Target Start/End: Complemental strand, 6637511 - 6637358
Alignment:
Q  227 cttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgataggatctttaataataaagtaaaatctattcctcaggtgttggaaaatgtc 326  Q
    ||||||||| |||| ||||||||||||||||| || ||| |||||| ||||||||||||||||||| ||||||||||| |||||  |||||||||| |||    
T  6637511 cttattgtgacttgttacggtttgggtgatttggcaagatagaaattataggatctttaataataaggtaaaatctatgcctca--tgttggaaaaggtc 6637414  T
Q  327 aagtacttattgacatggtggctcaagcaaaaaatgttgtaaatgtttctaatgagtt 384  Q
    || || |||| ||  |||||||| |||  ||||||||||| |||||||||| ||||||    
T  6637413 aaatatttatcgatgtggtggctgaag--aaaaatgttgtcaatgtttctattgagtt 6637358  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7126581 - 7126394
Alignment:
Q  1 aggtaggcgtggtgtcttacatgatgaggattc--tctgtgtttttggttgtggcgaggtggaatcggttcaccatttgtttctaaattgtaatattttt 98  Q
    ||||||| |||||||||||| |||||||  |||  | ||||||| ||| ||||| | ||| |||| |||||||||||||||| |||||| ||||||||||    
T  7126581 aggtaggtgtggtgtcttacttgatgagagttcgatgtgtgtttctggatgtggtggggtagaattggttcaccatttgtttttaaattttaatattttt 7126482  T
Q  99 ggctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcattttcaccattaggctt 186  Q
    || |  || ||||| |||||| |||||||||||||| | ||   |||||| || ||||| |||||||||||||| || ||||| ||||    
T  7126481 ggattcctttggtatttggtttgtgattgggtgggggtctcggcagttgatccaaattccatagtggatcatttccatcattatgctt 7126394  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 24181998 - 24181924
Alignment:
Q  212 acaatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgataggatctttaa 286  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||  | |||||||||||||||  |||||||    
T  24181998 acaatcttttatgcacttattgtggcttgctacaatttgggtgatttgacaagaaagaaatgatagattctttaa 24181924  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 18680145 - 18680206
Alignment:
Q  72 catttgtttctaaattgtaatatttttggctctctatggtacttggttcgtgattgggtggg 133  Q
    |||||||| |||||||||||| ||||||||||||| ||| |  |||||||||||||| ||||    
T  18680145 catttgttcctaaattgtaatttttttggctctctttggaatatggttcgtgattggttggg 18680206  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 7126368 - 7126311
Alignment:
Q  213 caatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaa 270  Q
    ||||||||||| | ||||||||  |||||||| ||||||||||||| || ||||||||    
T  7126368 caatcttttatgctcttattgtcacttgctacagtttgggtgatttggcaagaaagaa 7126311  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 26014901 - 26015107
Alignment:
Q  83 aaattgtaatatttttggctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcattttcaccattag 182  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||   ||   | |||| || ||||||||||||||||||||||| |||||     
T  26014901 aaattgtaatatttttggctttctatggtacctagttcgtgattgggtgggg-cctcgacaattgatccaaattctatagtggatcattttcatcattat 26014999  T
Q  183 gcttgtttgtctggccgtctaaaaacacaacaatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgataggatct 282  Q
    |||| |||||| ||  || | |||   | |||||||||||| | ||||||||| ||| ||| |||| ||||||||| || ||||||||||||||  ||||    
T  26015000 gcttatttgtcaggtggtttgaaatagcgacaatcttttatgcgcttattgtgtcttactatggttagggtgatttggcaagaaagaaatgatataatct 26015099  T
Q  283 ttaataat 290  Q
    ||||||||    
T  26015100 ttaataat 26015107  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 358
Target Start/End: Original strand, 37612966 - 37613243
Alignment:
Q  82 taaattgtaatatttttggctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcattttcaccatta 181  Q
    ||||||| ||||||||||| | ||||||||||||  ||||||||||||||||| ||||   | |||| || ||||||||||  |||||||| || |||||    
T  37612966 taaattgcaatatttttggatttctatggtactta-ttcgtgattgggtgggggtttcgacaattgatccaaattctatagcagatcatttccatcatta 37613064  T
Q  182 ggcttgtttgtctggccg--tctaaaaaca-caacaatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgatagg 278  Q
     |||| |||||| ||  |  | |||||||| ||| | |||||||| |  ||||||||||||||| | ||||||||||||| || ||||||||| ||||      
T  37613065 tgcttatttgtcaggtggtttgtaaaaacatcaatattcttttatgcgtttattgtggcttgcttcagtttgggtgatttggcaagaaagaaacgataaa 37613164  T
Q  279 atctttaataataaagtaaaatctattcctcaggtgttggaaaatgtcaagtacttattgacatggtggctcaagcaaaa 358  Q
    |||||| ||||||| | |||||||||  ||||  ||||||| || | |||||| |||| ||  |||||| | ||||||||    
T  37613165 atcttt-ataataaggcaaaatctatgtctcacttgttggataagggcaagtatttatcgatgtggtggatgaagcaaaa 37613243  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 15127816 - 15127892
Alignment:
Q  75 ttgtttctaaattgtaatatttttggctctctatggtacttggttcgtgattgggtggggttttcattagttgaccc 151  Q
    ||||| |||||||||||| |||| | |||||| |||||  |||||||||||||| |||| || ||||| ||||||||    
T  15127816 ttgttcctaaattgtaatgttttagcctctctttggtatctggttcgtgattggttgggtttctcattggttgaccc 15127892  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 21470077 - 21470154
Alignment:
Q  74 tttgtttctaaattgtaatatttttggctctctatggtacttggttcgtgattgggtggggttttcattagttgaccc 151  Q
    |||||| || |||||| || ||||| | ||||| |||||  ||||||||| |||| |||| |||||||||||||||||    
T  21470077 tttgttcctgaattgtcattttttttgttctctttggtatatggttcgtgcttggttgggtttttcattagttgaccc 21470154  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 396
Target Start/End: Complemental strand, 36046115 - 36045950
Alignment:
Q  228 ttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgataggatctttaataataaagtaaaatctattcctcaggtgttggaaaatgtca 327  Q
    |||||||| ||||||| |||| |  |||||| |||||||||||||||||   | |||||||||||  |||||| ||| |||| | |||||||||| ||||    
T  36046115 ttattgtgacttgctatggtt-gcttgatttggcgagaaagaaatgataaattttttaataataagttaaaatttatgcctcggatgttggaaaaggtca 36046017  T
Q  328 agtacttattgacatggtggctcaagcaaaaaatgttgtaaatgtttctaatgagtttgttggatggtg 396  Q
    |||||||||  | |||||||||||||  ||||||| | ||||||||||||||  ||||  |||||||||    
T  36046016 agtacttatcaatatggtggctcaag--aaaaatgctataaatgtttctaattggttttctggatggtg 36045950  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 276
Target Start/End: Original strand, 43064891 - 43065073
Alignment:
Q  94 tttttggctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcattttcaccattaggcttgtttgtc 193  Q
    ||||||||| ||||||||||||||||||||||||||||| | | ||   |||||| || |||| | |||||||||||||  | ||||| |||| ||||||    
T  43064891 tttttggctttctatggtacttggttcgtgattgggtggaggtctcgacagttgatccaaattttttagtggatcatttatatcattatgcttatttgtc 43064990  T
Q  194 tggccgtctaaaaacacaacaatcttttattcacttattgtggcttgctacggtttgggtgattttgcgagaaagaaatgata 276  Q
     ||  ||    ||| |||||||  |||||| |  |||||||| ||||||||  |||| ||||||| || ||||||||||||||    
T  43064991 aggtggttcgtaaaaacaacaactttttatgcgtttattgtgacttgctacaatttgagtgatttggcaagaaagaaatgata 43065073  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 36046210 - 36046121
Alignment:
Q  92 tatttttggctctctatggtacttggttcgtgattgggtggggttttcattagttgacccgaattctatagtggatcattttcaccatta 181  Q
    ||||||||||||| | ||||| |||||| |||||||||||| | ||||    |||||||| |||| |||||||||| |||||||||||||    
T  36046210 tatttttggctctatgtggtatttggttggtgattgggtggaggtttcgcgggttgacccaaattttatagtggattattttcaccatta 36046121  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 393
Target Start/End: Complemental strand, 39181915 - 39181775
Alignment:
Q  251 ggtgattttgcgagaaagaaatgataggatctttaataataaagtaaaatctattcctcaggtgttggaaaatgtcaagtacttattgacatggtggctc 350  Q
    |||||||| || ||||||||||||||| |||||||||||||||| |||||||||  || |  | ||||| || ||||| || |||| ||  ||||| ||     
T  39181915 ggtgatttggcaagaaagaaatgatagaatctttaataataaagcaaaatctatgtctaatttattggataaggtcaaatatttatcgatgtggtgactg 39181816  T
Q  351 aagcaaaaaatgttgtaaatgtttctaatgagtttgttggatg 393  Q
    |||  |||||| ||||||||||||||| ||||||  |||||||    
T  39181815 aag--aaaaatattgtaaatgtttctattgagttatttggatg 39181775  T

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