View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2973_low_2 (Length: 348)
Name: NF2973_low_2
Description: NF2973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2973_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 23034376 - 23034525
Alignment:
| Q |
1 |
aacatgaaagtgagagtgcagccgaaggttcagaatctagtttggagagactgttgtggtggttgttggttatgtgcaaacggttgtatggaaaacatgt |
100 |
Q |
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| T |
23034376 |
aacatgaaagtgagagtgcaaccgaaggttcagaatctagtttggagagactgttgtggtggttgttggttatgtgccaacggttgt-tggaaaacatgt |
23034474 |
T |
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| Q |
101 |
ggctttatccagatcccgaaagattgaaatgtcacgtggatgctagatttc |
151 |
Q |
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| T |
23034475 |
ggctttatccagatcccgaaagattgaaatgtaacatggatgctagatttc |
23034525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 23034613 - 23034720
Alignment:
| Q |
179 |
caaaattgactcgaagatactggcagatgctattgttctagagcagattgtatttctgagttacatgttatcatacctgagattataagtaatttaaatt |
278 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||| |||||||| |
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| T |
23034613 |
caaaattgactcgaagatactggcggatgctattgttctagagcagattgtatttctgaattacacgttatcacagctgagattataagtattttaaatt |
23034712 |
T |
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| Q |
279 |
caaattac |
286 |
Q |
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|||||||| |
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| T |
23034713 |
caaattac |
23034720 |
T |
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