View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_high_2 (Length: 524)
Name: NF2974_high_2
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Complemental strand, 43377923 - 43377435
Alignment:
| Q |
18 |
accaggaggacattccaatgcagcttcaagaactctatgatgtataccatgagaatcaatagcatatccacctttatgatcatgaccagagaaacaaacc |
117 |
Q |
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| T |
43377923 |
accaggaggacattccaatgcagcttcaagaactctatgatgtataccatgagaatcaatagcatatccacctttatgatcatgaccagagaaacaaacc |
43377824 |
T |
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| Q |
118 |
ttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaac |
217 |
Q |
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| T |
43377823 |
ttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaac |
43377724 |
T |
|
| Q |
218 |
aaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaacct |
317 |
Q |
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| T |
43377723 |
aaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgtttctttccaatacctccattgaacatgagaaacct |
43377624 |
T |
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| Q |
318 |
tctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttttatgatgatctttt |
417 |
Q |
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| T |
43377623 |
tctttcaagtccaactaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctccgatgttttatgatgatctttt |
43377524 |
T |
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| Q |
418 |
ggccaaccaattgcacttatatcatatccatcaagaactacaaatctatattccgggacgggagaaaattcgtagtaagcataaccttc |
506 |
Q |
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| T |
43377523 |
ggccaaccaattgcacttatatcatatccatcaagaactacaaatctatattccgggacgggagaaaattcgtagtaagcataaccttc |
43377435 |
T |
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Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 503
Target Start/End: Complemental strand, 34428908 - 34428427
Alignment:
| Q |
22 |
ggaggacattccaatgcagcttcaagaactctatgatgtataccatgagaatcaatagcatatccacctttatgatcatgaccagagaaacaaaccttca |
121 |
Q |
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||||||||||| | |||||||||||||||||||| |||| |||||||||||||| | ||| |||||||||||||| || |||| | | | || | |
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| T |
34428908 |
ggaggacattcaagagcagcttcaagaactctatggtgtaccccatgagaatcaatggaatacccacctttatgatcgtgtccagcaagaacggctttaa |
34428809 |
T |
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| Q |
122 |
cacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaacaaac |
221 |
Q |
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| T |
34428808 |
cacaactgtatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatctagaggcagatggcatgtgac |
34428709 |
T |
|
| Q |
222 |
cacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaaccttctt |
321 |
Q |
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|| ||||| ||||||||||| ||||| || || |||||| || |||||||||||| |||| |||||||| |||||| || ||||| |||||||||||| |
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| T |
34428708 |
aaccactttctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgttaaacataagaaaccttctt |
34428609 |
T |
|
| Q |
322 |
tcaagtccaaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttttatgatgatcttttggcc |
421 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||||| | || ||||||| ||||| ||||||| ||||||| | |||| |
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| T |
34428608 |
tcaagcccctttaaattatttggactattcttatcttcatttggattcttctccctaagcaatttcaaggcctccaatgtttttggatgatcctgaggcc |
34428509 |
T |
|
| Q |
422 |
aaccaattgcacttatatcatatccatcaagaactacaaatctatattccgggacgggagaaaattcgtagtaagcataacc |
503 |
Q |
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||||||| ||||| || ||||| | ||| |||||||||||||||||||| || || || || || || ||||||||| |||| |
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| T |
34428508 |
aaccaatggcactgatgtcatagctatccagaactacaaatctatattctggcactggtgagaagtcatagtaagcacaacc |
34428427 |
T |
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