View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_high_4 (Length: 416)
Name: NF2974_high_4
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 8872487 - 8872288
Alignment:
| Q |
18 |
agtcttttactagaaccaaaataagggaaacaccatagaaacacaggtttagtattgagggctctttggtgaattattatggttgggaaacacattttta |
117 |
Q |
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| T |
8872487 |
agtcttttactagaaccaaaataagggaaacaccatagaaactcaggtttagtattgagggctctttggtgaattattatggttgggaaacacattttta |
8872388 |
T |
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| Q |
118 |
acatcttgggcagttagaaatcattagggaaaagattaacggataagcatgagtatgatttgcaagatgtgaggtatgttcctggacttgagagaaattg |
217 |
Q |
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| T |
8872387 |
acatcttgggcagttagaaatcattagggaaaagattaacggataagcatgagtatgatttgcaagatgtgaggtatgttcctggacttgagagaaattg |
8872288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 224 - 407
Target Start/End: Complemental strand, 8872245 - 8872062
Alignment:
| Q |
224 |
ataatgttcctggacaatgttgtgaattttatttcacatccgtttaaaagacacaatggatatacacttttagaagttgagtcatcaaagggtttatggt |
323 |
Q |
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| T |
8872245 |
ataatgttcctggacaatgttgtgaattttatttcacatccgttcaaaagacataatggatatacacttttagaagttgagtcatcaaagggtttatggt |
8872146 |
T |
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| Q |
324 |
gtgaagctgttgcagaagaagtggaatcttccaatagttggagtagaagaagacaatcaattatggctcatgtgtgtgtctgtg |
407 |
Q |
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| T |
8872145 |
gtgaagctgttgtagaagaagtggaatcttccaatagttggagtagaagaagacaatcaattatggctcatgtgtgtgtatgtg |
8872062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 2431935 - 2431884
Alignment:
| Q |
99 |
gttgggaaacacatttttaacatcttgggcagttagaaatcattagggaaaa |
150 |
Q |
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| T |
2431935 |
gttgggaaacacattttaaatatcttgatcagttagaaatcattagggaaaa |
2431884 |
T |
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