View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_high_6 (Length: 348)
Name: NF2974_high_6
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 36465373 - 36465036
Alignment:
| Q |
1 |
tatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatttttaaagtatcatttcactattaa |
100 |
Q |
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| T |
36465373 |
tatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatttttaaagtatcatttctctattaa |
36465274 |
T |
|
| Q |
101 |
aatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacatccaacactt |
200 |
Q |
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| T |
36465273 |
aatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacacccaacactt |
36465174 |
T |
|
| Q |
201 |
gacctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaatgtcatttttcctgact |
300 |
Q |
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| T |
36465173 |
gacctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaatgtcatttttcctgact |
36465074 |
T |
|
| Q |
301 |
ggatgataacatctttgatactaatatttttcacaggt |
338 |
Q |
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| T |
36465073 |
ggatgataacatctttgatactaatatttttcacaggt |
36465036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 334
Target Start/End: Complemental strand, 36474548 - 36474218
Alignment:
| Q |
25 |
ctttctaaccaatataacacgtgctacatgttgtcttagtgt---gtgtcctattttt---aaagtatcatttcactattaaaatagataacatggatt- |
117 |
Q |
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| T |
36474548 |
ctttctaaccaatataacatgtgctatatgttgtcttagtgtttcttataatatttttgtcaaagtatcatttctctattaaaatacgtaatatggattg |
36474449 |
T |
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| Q |
118 |
------------tttgtttgtttg--gtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacatccaacacttgac |
203 |
Q |
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| T |
36474448 |
aatgcatatgtgtttgtttgtttggtgtgaagtcatgattactggtggagcaggagcaactgttttatacaacttgaagaaaagacacccaacacttgac |
36474349 |
T |
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| Q |
204 |
ctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaatgtcatttttcctgactgga |
303 |
Q |
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| T |
36474348 |
ctgcctgtgattgactatgatttagcacttcttttccaaccaatgttaatgcttggaatcagtcttggtgttgctttcaatctcattttccctgactgga |
36474249 |
T |
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| Q |
304 |
tgataacatctttgatactaatatttttcac |
334 |
Q |
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| T |
36474248 |
tgttaacaactttgctaatcatatttttcac |
36474218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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