View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2974_low_1 (Length: 645)

Name: NF2974_low_1
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2974_low_1
NF2974_low_1
[»] chr6 (4 HSPs)
chr6 (14-608)||(24465248-24465841)
chr6 (263-297)||(8065656-8065690)
chr6 (306-363)||(19218462-19218519)
chr6 (592-629)||(24465849-24465886)
[»] chr8 (3 HSPs)
chr8 (305-373)||(20539608-20539676)
chr8 (306-377)||(2963148-2963219)
chr8 (306-365)||(18835381-18835440)
[»] chr5 (1 HSPs)
chr5 (306-373)||(20100455-20100522)
[»] chr7 (3 HSPs)
chr7 (320-464)||(3132786-3132931)
chr7 (306-377)||(19393636-19393707)
chr7 (306-365)||(24443539-24443598)
[»] chr2 (3 HSPs)
chr2 (238-307)||(40301073-40301142)
chr2 (306-373)||(28741238-28741305)
chr2 (346-400)||(24471605-24471659)
[»] chr3 (3 HSPs)
chr3 (412-464)||(16200237-16200289)
chr3 (412-464)||(16200543-16200595)
chr3 (308-365)||(14147052-14147109)
[»] scaffold0031 (1 HSPs)
scaffold0031 (306-365)||(40200-40259)
[»] chr4 (2 HSPs)
chr4 (306-365)||(19362441-19362500)
chr4 (261-300)||(21454022-21454062)


Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 14 - 608
Target Start/End: Original strand, 24465248 - 24465841
Alignment:
Q  14 gaataccatattatccttttacccttatgccattattgaacacacgggatagactatgtaatcattgtctagttcaatatcccattcaccatgattcgtg 113  Q
    |||| ||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24465248 gaatgccatattatccttttactcttatgccattattgaacac-cagaatagactatgtaatcattgtctagttcaatatcccattcaccatgattcgtg 24465346  T
Q  114 gattgcctatcaattggctttataatcatctttttacatacaatgtttgagaagacaacaaagcactataatccacatttaggaattattgtgatttcac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  24465347 gattgcctatcaattggctttataatcatctttttacatacaatgtttgagaagacaacaaagcactataatccacatttaggaatcatagtgatttcac 24465446  T
Q  214 gtcgaaggtggcaatacaactattactatgagaatatctcatgactctacataactcattatatagtattctcatggtgggtcaatttggtatactccta 313  Q
    ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24465447 gtcgaaggtagcaacaccactattactatgagaatatctcatgactctacataactcactatatagtattctcatggtgggtcaatttggtatactccta 24465546  T
Q  314 atattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcattagtaaattcacataacagtctctatgaattactattttc 413  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24465547 atattcatacttatgtgaagactttatatatcatattcatgacccatgagatatgatcattagtaaattcatataacagtctctatgaattactattttc 24465646  T
Q  414 ccatttcacattaaatcatgattacaaatactttaagaataatgtccttataactaatgatgaaacttgtaaacacactatcaaataacctaagatcttt 513  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24465647 ccatttcacattaaatcatgactacaaatactttaagaataatgtccttataattaatgatgaaacttgtaaacacactatcaaataacctaagatcttt 24465746  T
Q  514 gaatcaaaacaatcaatatctacattaaaagacaaacannnnnnnnggggcacaaaagacaaatagttttattaaaacgaaacaaaaattatttt 608  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  24465747 gaatcaaaacaatcaatatctacattaaaagacaaacattttttttggggcacaaaagacaaatagttttattaaaaagaaacaaaaattttttt 24465841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 8065656 - 8065690
Alignment:
Q  263 cataactcattatatagtattctcatggtgggtca 297  Q
    |||||||||||||||||||||||||||||||||||    
T  8065656 cataactcattatatagtattctcatggtgggtca 8065690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 306 - 363
Target Start/End: Complemental strand, 19218519 - 19218462
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgag 363  Q
    ||||||||||||| |||| |||||  |||||| |||| ||||||||||||||||||||    
T  19218519 tactcctaatatttatacatatgtatagacttaatatctcatattcatgacccatgag 19218462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 629
Target Start/End: Original strand, 24465849 - 24465886
Alignment:
Q  592 gaaacaaaaattattttatttatttgtataaacaacct 629  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  24465849 gaaaaaaaatttattttatttatttgtataaacaacct 24465886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 20539608 - 20539676
Alignment:
Q  305 atactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcat 373  Q
    |||||| ||||||| ||||||||||  | |||| |||| |||||||||||||||||||||| |||||||    
T  20539608 atactcttaatatttatacttatgtatacacttaatatctcatattcatgacccatgagatgtgatcat 20539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 2963148 - 2963219
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcattagt 377  Q
    ||||||||||||| |||| |||||  |||||| |||| ||||||| || |||||||||||| | ||||||||    
T  2963148 tactcctaatatttatacctatgtatagacttaatatctcatatttataacccatgagatacggtcattagt 2963219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 18835440 - 18835381
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 365  Q
    ||||||||||||| ||||||||||  |||||| |||| ||||||  ||||||||||||||    
T  18835440 tactcctaatatttatacttatgtatagacttaatatctcatatctatgacccatgagat 18835381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 20100455 - 20100522
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcat 373  Q
    ||||||||||||| |||| ||| |  |||||| |||| |||||||||||||||||||||| |||||||    
T  20100455 tactcctaatattgatacctatctatagacttaatatctcatattcatgacccatgagatgtgatcat 20100522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 464
Target Start/End: Complemental strand, 3132931 - 3132786
Alignment:
Q  320 atacttatgtgaagactttatatgtcatattca-tgacccatgagatatgatcattagtaaattcacataacagtctctatgaattactattttcccatt 418  Q
    |||| ||||||||||||| |||| ||||||||| | | | ||||||| ||||||| |||  | ||||||   |||||||||| ||||||||||| ||| |    
T  3132931 atacatatgtgaagacttgatatctcatattcatttatctatgagatgtgatcatcagtctaatcacattgtagtctctatgcattactatttttccaat 3132832  T
Q  419 tcacattaaatcatgattacaaatactttaagaataatgtccttat 464  Q
    ||  | |||| |  ||||||||||||||| | ||||||| ||||||    
T  3132831 tccaagtaaaactagattacaaatactttcataataatgaccttat 3132786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 19393636 - 19393707
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcattagt 377  Q
    ||||||||||||| |||| |||||  |||||| |||| ||||||| ||||||||||| || || ||||||||    
T  19393636 tactcctaatatttatacctatgtatagacttaatatctcatatttatgacccatgaaatgtggtcattagt 19393707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 24443539 - 24443598
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 365  Q
    |||||||||||||||||| |||||  | |||| |||| | ||||||||||||||||||||    
T  24443539 tactcctaatattcatacctatgtataaacttaatatcttatattcatgacccatgagat 24443598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 40301073 - 40301142
Alignment:
Q  238 actatgagaatatctcatgactctacataactcattatatagtattctcatggtgggtcaatttggtata 307  Q
    ||||||||| ||||| ||||| || ||||||   |||| ||||||||||||||||||||||| |||||||    
T  40301073 actatgagactatcttatgacacttcataacatgttatgtagtattctcatggtgggtcaatctggtata 40301142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Original strand, 28741238 - 28741305
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagatatgatcat 373  Q
    ||||||||||||| |||| |||||  | |||| |||| ||||||||||||| |||||||| |||||||    
T  28741238 tactcctaatatttatacctatgtacatacttaatatctcatattcatgacgcatgagatgtgatcat 28741305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 24471605 - 24471659
Alignment:
Q  346 atattcatgacccatgagatatgatcattagtaaattcacataacagtctctatg 400  Q
    |||||||||||||||||||| || |||||| || |||||||||| ||||| ||||    
T  24471605 atattcatgacccatgagatgtggtcattattatattcacataatagtctttatg 24471659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 464
Target Start/End: Complemental strand, 16200289 - 16200237
Alignment:
Q  412 tcccatttcacattaaatcatgattacaaatactttaagaataatgtccttat 464  Q
    ||||| |||||| |||||| ||| ||| |||||||||||||||||||||||||    
T  16200289 tcccacttcacaataaatcttgactacgaatactttaagaataatgtccttat 16200237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 464
Target Start/End: Complemental strand, 16200595 - 16200543
Alignment:
Q  412 tcccatttcacattaaatcatgattacaaatactttaagaataatgtccttat 464  Q
    ||||| |||||| |||||| ||| ||| |||||||||||||||||||||||||    
T  16200595 tcccacttcacaataaatcttgactacgaatactttaagaataatgtccttat 16200543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 14147109 - 14147052
Alignment:
Q  308 ctcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 365  Q
    ||||||||||| |||| |||||  |||||| |||| |||||| |||||||||||||||    
T  14147109 ctcctaatatttatacatatgtatagacttaatatctcatatccatgacccatgagat 14147052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 40200 - 40259
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 365  Q
    ||||||||||||| |||| |||||  |||||| |||| |||||| |||||||||||||||    
T  40200 tactcctaatatttatacctatgtatagacttaatatctcatatccatgacccatgagat 40259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 19362500 - 19362441
Alignment:
Q  306 tactcctaatattcatacttatgtgaagactttatatgtcatattcatgacccatgagat 365  Q
    ||||||||||||| |||| |||||  ||| || |||| ||||||||||||||||||||||    
T  19362500 tactcctaatattaatacctatgtatagatttaatatctcatattcatgacccatgagat 19362441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 21454022 - 21454062
Alignment:
Q  261 tacataactcat-tatatagtattctcatggtgggtcaatt 300  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  21454022 tacataactcatatatgtagtattctcatggtgggtcaatt 21454062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University