View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_low_13 (Length: 244)
Name: NF2974_low_13
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_13 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 33973423 - 33973575
Alignment:
| Q |
13 |
cagagaagaaataaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaag |
112 |
Q |
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| T |
33973423 |
cagagaagaaataaatagtttgatagaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaat |
33973522 |
T |
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| Q |
113 |
gatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaacca |
165 |
Q |
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| T |
33973523 |
gatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaacca |
33973575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 33950801 - 33950994
Alignment:
| Q |
40 |
agaaagtgcatgcaaatcttcttttgagaatgattcctacg------ttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttac |
133 |
Q |
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| T |
33950801 |
agaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttgaggagaaccaatctcttactgtaaatgatgttgaagagacgctttat |
33950900 |
T |
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| Q |
134 |
aaggccagagaaattcttgagcttctcaaccatgaattcaatgaagatggacaacttttcaagcgtcctttcgatgttcctgaaaatccaaaat |
227 |
Q |
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| T |
33950901 |
aagaccagagaaattcttgagcttctcaaccatgaattcaatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaat |
33950994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 33990274 - 33990479
Alignment:
| Q |
37 |
agaagaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaag |
136 |
Q |
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| T |
33990274 |
agaagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataag |
33990373 |
T |
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| Q |
137 |
gccagagaaattcttgagcttctcaaccatg---------------aattcaatgaagatggacaacttttcaagcgtcctttcgatgttcctgaaaatc |
221 |
Q |
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| T |
33990374 |
gccagagaaattcttgagcttctcaactatgaaacttttgaacacaaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatc |
33990473 |
T |
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| Q |
222 |
caaaat |
227 |
Q |
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|||||| |
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| T |
33990474 |
caaaat |
33990479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 165
Target Start/End: Original strand, 33959448 - 33959573
Alignment:
| Q |
40 |
agaaagtgcatgcaaatcttcttttgagaatgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggcc |
139 |
Q |
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| T |
33959448 |
agaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagcca |
33959547 |
T |
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| Q |
140 |
agagaaattcttgagcttctcaacca |
165 |
Q |
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| T |
33959548 |
agagaaattcttgagcttctcaacca |
33959573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 10335 - 10424
Alignment:
| Q |
70 |
tgattcctacgttgttgatgagaaccaatctcttattgtaaaggatgtcgaagagacactttacaaggccagagaaattcttgagcttct |
159 |
Q |
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| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttct |
10424 |
T |
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