View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2974_low_14 (Length: 237)
Name: NF2974_low_14
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34849260 - 34849038
Alignment:
| Q |
1 |
aaataactcaaaaatattaaatgactgttaaattagtcccgataaagactaatttcactgacatttgannnnnnn-atttgtcatagaacaaataagtct |
99 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34849260 |
aaataactaaaaaatattaaatgacggttaaattagtctcaataaggactaatttcactgacatttgatgttttttatttgtcatagaacaaataagtct |
34849161 |
T |
|
| Q |
100 |
ctgtacatcgaaaaccaatttgtttcttctaagcatatttggaactcttaacacaccccttatggctaagattgactatttcaagcatgactcaagtgat |
199 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34849160 |
ctatacatcgaaaaccaatttgtttcctctaagcatatttggaactcttaacacaccccttatagctaagattgactatctcaagcatgactcaagtgat |
34849061 |
T |
|
| Q |
200 |
cttagagtgatcgggtaaatttt |
222 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
34849060 |
cttagagtcatcgggtaaatttt |
34849038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University