View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2974_low_15 (Length: 235)
Name: NF2974_low_15
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_15 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 40643524 - 40643745
Alignment:
| Q |
14 |
acaaactactagccaaatttcaatattacatcattacattagttaaaggcaaaatgggaaggcacacaaaaaagacataagtaacaagaacgcttaatta |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40643524 |
acaaactactaaccaaatttcaatattacatcatcacattagttaaagccaaaatgggaaggcacacaaaaaagacataagtaacaagaacgcttaatta |
40643623 |
T |
|
| Q |
114 |
ctcaccaaacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40643624 |
ctcaccaaacactttatgagagcttcaactttgcccttacatgacccttagaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagac |
40643723 |
T |
|
| Q |
214 |
atgggtaagcaactcaccaccc |
235 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40643724 |
atgggtaagcaactcaccaccc |
40643745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 40652287 - 40652414
Alignment:
| Q |
107 |
ttaattactcaccaaacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaa |
206 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
40652287 |
ttaactacccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaa |
40652386 |
T |
|
| Q |
207 |
gccagacatgggtaagcaactcaccacc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40652387 |
gccagacatgggtaagcaactcaccacc |
40652414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 40642441 - 40642555
Alignment:
| Q |
121 |
aacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacatgggta |
220 |
Q |
| |
|
|||| ||||| ||| | ||||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
40642441 |
aacattttataagaacgtcaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagctagacatgggta |
40642540 |
T |
|
| Q |
221 |
agcaactcaccaccc |
235 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
40642541 |
agaaactcgccaccc |
40642555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 535271 - 535230
Alignment:
| Q |
14 |
acaaactactagccaaatttcaatattacatcattacattag |
55 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
535271 |
acaaactactaaccaaatttcattattacatcattacattag |
535230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University