View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_low_19 (Length: 203)
Name: NF2974_low_19
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 40377137 - 40376966
Alignment:
| Q |
18 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
117 |
Q |
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| T |
40377137 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
40377038 |
T |
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| Q |
118 |
acctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaaggcgagttctctg |
189 |
Q |
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| T |
40377037 |
acctcatgtatgccaagagggcatttgtacattggtatgtcggtgaagggatggaagaaggcgagttctctg |
40376966 |
T |
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Target: chr3 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 51751704 - 51751535
Alignment:
| Q |
18 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
117 |
Q |
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| T |
51751704 |
gttcctggtggtgatcttgccaaggtgcagagggccgtgtgcatgatctctaactctaccagtgttgctgaggtgttttccaggattgatcataagtttg |
51751605 |
T |
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| Q |
118 |
acctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaaggcgagttctc |
187 |
Q |
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| T |
51751604 |
atcttatgtatgctaagcgtgcttttgtgcattggtatgttggtgagggtatggaagaaggtgagttctc |
51751535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 28713808 - 28713935
Alignment:
| Q |
18 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
117 |
Q |
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| T |
28713808 |
gttcctggtggtgaccttgctaaggtacagagggcagtttgcatgatttcaaactccacaagtgtagctgaggtgtttggtcgcatcgatcacaagtttg |
28713907 |
T |
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| Q |
118 |
acctcatgtatgccaagagggcatttgt |
145 |
Q |
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| T |
28713908 |
atctgatgtatgccaagcgtgcatttgt |
28713935 |
T |
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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 33271028 - 33271126
Alignment:
| Q |
80 |
tgttgctgaggttttctcacgcattgaccacaaatttgacctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaagg |
178 |
Q |
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| T |
33271028 |
tgttgccgaggttttctctcgcattgatcataaatttgatctcatgtatgctaaaagggcatttgtacattggtatgttggtgaaggaatggaagaagg |
33271126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 47927834 - 47927674
Alignment:
| Q |
18 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
117 |
Q |
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| T |
47927834 |
gttcctggtggtgaccttgctaaggtacagagggcagtttgcatgatttcaaactccacaagtgtagctgaggtgtttggtcgcattgatcacaagtttg |
47927735 |
T |
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| Q |
118 |
acctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaagg |
178 |
Q |
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| T |
47927734 |
atctgatgtatgccaagcgtgcttttgttcactggtatgtgggtgagggtatggaagaagg |
47927674 |
T |
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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 80 - 187
Target Start/End: Complemental strand, 35668986 - 35668879
Alignment:
| Q |
80 |
tgttgctgaggttttctcacgcattgaccacaaatttgacctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaaggc |
179 |
Q |
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|||||| ||||| ||||| |||||||| ||||| || || || |||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| |
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| T |
35668986 |
tgttgcggaggtcttctcccgcattgatcacaagttcgatctgatgtatgccaagagagcctttgttcactggtatgtcggtgagggcatggaagaaggg |
35668887 |
T |
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| Q |
180 |
gagttctc |
187 |
Q |
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| T |
35668886 |
gagttctc |
35668879 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 18162796 - 18162962
Alignment:
| Q |
18 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
117 |
Q |
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||||| || |||||||||||||||||||||||||| || | ||||| || ||||| || ||||||||| | || || || | |||||||| || || | |
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| T |
18162796 |
gttcctggtggtgatcttgccaaggtgcagagggctgtaggaatgatctctaactctaccagtgttgctcaagtgttttccagtattgaccataagttcg |
18162895 |
T |
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| Q |
118 |
acctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaaggcgagtt |
184 |
Q |
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| T |
18162896 |
atcttatgtatgccaagcgtgcttttgtgcactggtatgtgtgtgagggtatggaagaaggtgagtt |
18162962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 18306487 - 18306321
Alignment:
| Q |
18 |
gttccagggggtgatcttgccaaggtgcagagggccgtgtgcatgatttccaactccactagtgttgctgaggttttctcacgcattgaccacaaatttg |
117 |
Q |
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| T |
18306487 |
gttcctggtggtgatcttgccaaggtgcagagggctgtaggaatgatctctaactctaccagtgttgctcaagtgttttccagaattgaccataagttcg |
18306388 |
T |
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| Q |
118 |
acctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaaggcgagtt |
184 |
Q |
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| T |
18306387 |
atcttatgtatgccaagcgtgcttttgtgcactggtatgtgtgtgagggtatggaagaaggtgagtt |
18306321 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 10031229 - 10031153
Alignment:
| Q |
102 |
attgaccacaaatttgacctcatgtatgccaagagggcatttgtacactggtatgtcggtgaagggatggaagaagg |
178 |
Q |
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| T |
10031229 |
attgatcacaaatttgatcttatgtatgcaaaaagagcatttgtgcattggtatgttagtgaaggaatggaagaagg |
10031153 |
T |
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