View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_low_5 (Length: 412)
Name: NF2974_low_5
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 106 - 316
Target Start/End: Complemental strand, 33626896 - 33626685
Alignment:
| Q |
106 |
gtttataagttacgaatgtaagtcgcaatccatgattcagacgaaattatgaaaatgctctctcacaaaatgacacttaagaaatgatgcagtataaaga |
205 |
Q |
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| T |
33626896 |
gtttataagttacgaatgtaagtcgcaatccatgattcagatgaaattatgaaaatgctctctcacaaaatgacacttaagaaatgatgcagtataaaga |
33626797 |
T |
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| Q |
206 |
tctaacacaatgacatgaagacataaaacttgccagtcgtaaactcatggtaaaattttagataacctt-gtcaagaatttcgacgtgtaaaatctaaga |
304 |
Q |
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| T |
33626796 |
tctaacacaatgacatgaagacataaaacttgccagtcgtagactcatggtaaaatttgagataaccttagtcaagaatttcgacgtgtaaaatctaaga |
33626697 |
T |
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| Q |
305 |
taatccaacgtt |
316 |
Q |
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| T |
33626696 |
taatccaacgtt |
33626685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 33626526 - 33626443
Alignment:
| Q |
316 |
tttatttttcttgttgtttatcgtcttctcttgaatacacatggatcaagatacgatgacccaataaggatccgattcgatctc |
399 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33626526 |
tttatttttcttgttgtttatcgtcttctcctgtatacacatggatcaagatacgatgacccaataaggatctgattcgatctc |
33626443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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