View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2974_low_7 (Length: 319)

Name: NF2974_low_7
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2974_low_7
NF2974_low_7
[»] chr8 (3 HSPs)
chr8 (19-311)||(36465373-36465647)
chr8 (79-172)||(26617448-26617541)
chr8 (56-167)||(44145106-44145217)
[»] chr1 (3 HSPs)
chr1 (42-170)||(23722671-23722799)
chr1 (79-170)||(23085635-23085726)
chr1 (58-174)||(23949078-23949194)
[»] chr4 (3 HSPs)
chr4 (79-174)||(36895140-36895235)
chr4 (79-174)||(34390529-34390623)
chr4 (118-179)||(5614603-5614664)
[»] chr7 (2 HSPs)
chr7 (55-114)||(26529835-26529894)
chr7 (61-171)||(31047513-31047623)
[»] chr3 (2 HSPs)
chr3 (79-174)||(27156890-27156985)
chr3 (58-174)||(54346115-54346231)
[»] chr2 (1 HSPs)
chr2 (82-174)||(7305808-7305900)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 36465647 - 36465373
Alignment:
Q  19 ataaaatcgtaggaaaccatacgaagctatacttggattgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaac 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36465647 ataaaatcgtaggaaactatacgaagctatacttggattgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaac 36465548  T
Q  119 aagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgcacatgtgctagcaataaataaaagtttgaatgtgatatggttca 218  Q
    |||||||||||||||| |||||||||||||||||||||||                  ||||||| ||||||||||||||||||||||||||||||||||    
T  36465547 aagtgggagagatccctacaccccatttactccttcaaaa------------------atgtgctggcaataaataaaagtttgaatgtgatatggttca 36465466  T
Q  219 tgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaaggacttttatacttgtcacctcattgt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36465465 tgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaaggacttttatacttctcacctcattgt 36465373  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 26617448 - 26617541
Alignment:
Q  79 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgc 172  Q
    |||||||||||| |||||||  |||| |||||||||   ||||| |||||||| ||| |||||||| ||||||||   ||||| ||||||||||    
T  26617448 acatgaagaatagtttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatctactcctttggaaatttgtaagaatgc 26617541  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 44145217 - 44145106
Alignment:
Q  56 ttgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttca 155  Q
    |||| |||||||||||| |||  |||||||| | |||||||||  |||| ||||||||    ||||| ||||| ||||||||||||||| |||| ||||     
T  44145217 ttgcatgaatgcaatcacgaagcacatgaaggacaatttcatcatcattcccacaacatgggcaagttggagaaatcccaacaccccatctacttcttcg 44145118  T
Q  156 aaaattggtaag 167  Q
     ||||| |||||    
T  44145117 caaattagtaag 44145106  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 23722799 - 23722671
Alignment:
Q  42 aagctatacttggattgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccc 141  Q
    |||| |||||||| | ||||| ||||||||  |||  |||||||||| |||||||||  |||| |||||||||  |||||| |||||||| ||| |||||    
T  23722799 aagccatacttgggtagcgtggatgcaatcgcgaagcacatgaagaacaatttcatcttcatttccacaacacggacaagtaggagagattccaccaccc 23722700  T
Q  142 catttactccttcaaaaattggtaagaat 170  Q
    ||||||||||||   ||||| ||||||||    
T  23722699 catttactccttttgaaatttgtaagaat 23722671  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 23085635 - 23085726
Alignment:
Q  79 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaat 170  Q
    |||||||||| |||||||||  |||| ||| |||||   ||||| |||||||| ||| |||||||||||||||||| |||||| ||||||||    
T  23085635 acatgaagaacaatttcatcttcatttccataacacgtgcaagtaggagagattccaccaccccatttactccttcgaaaatttgtaagaat 23085726  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 23949194 - 23949078
Alignment:
Q  58 gcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaa 157  Q
    ||||| ||||||||  |||  |||||||||| | |||||||  |||| |||||||||   ||| | ||||| || ||| |||||||||||||||||   |    
T  23949194 gcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggagatattccaccaccccatttactcctttgga 23949095  T
Q  158 aattggtaagaatgcgc 174  Q
    |||| ||||||||||||    
T  23949094 aatttgtaagaatgcgc 23949078  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 36895140 - 36895235
Alignment:
Q  79 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 174  Q
    ||||||| || |||||||||  |||| |||||||||   ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||||||||||    
T  36895140 acatgaaaaacaatttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagaatgcgc 36895235  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 34390529 - 34390623
Alignment:
Q  79 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 174  Q
    |||||||||| | |||||||  |||| ||||||||||  ||||| |||||||| ||| ||||| ||||||||||||  ||||| ||||||||||||    
T  34390529 acatgaagaacagtttcatcttcatttccacaacacaggcaagtaggagagattccaccaccc-atttactccttcggaaatttgtaagaatgcgc 34390623  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 5614664 - 5614603
Alignment:
Q  118 caagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgcacatg 179  Q
    ||||| |||||||| ||| || ||||| ||||||||||| |||| |||||||||||| ||||    
T  5614664 caagtaggagagattccaccatcccatctactccttcaataatttgtaagaatgcgcccatg 5614603  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 26529835 - 26529894
Alignment:
Q  55 attgcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacac 114  Q
    ||||||||||||||||||| || |||||||||||  |||||||| ||||| |||||||||    
T  26529835 attgcgtgaatgcaatcataaagtacatgaagaaacatttcatcgccatttccacaacac 26529894  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 31047623 - 31047513
Alignment:
Q  61 tgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaat 160  Q
    |||||||||| ||| |  |||||||||| |||||||||  |||||||||||||   | ||||||| || |||||||||| |||| |||| |||| ||| |    
T  31047623 tgaatgcaattatggagcacatgaagaacaatttcatcatcattaccacaacattgataagtgggtgaaatcccaacactccatctacttcttcgaaagt 31047524  T
Q  161 tggtaagaatg 171  Q
    | |||| ||||    
T  31047523 tagtaataatg 31047513  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 27156890 - 27156985
Alignment:
Q  79 acatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 174  Q
    |||||||||| | |||||||  |||| |||||||||   ||||| |||||||| ||| ||||||||||||||||||  ||||| ||||| ||||||    
T  27156890 acatgaagaacagtttcatcttcatttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagtatgcgc 27156985  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 54346231 - 54346115
Alignment:
Q  58 gcgtgaatgcaatcatgaaatacatgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaa 157  Q
    ||||| ||||||||  |||  |||||||||| | |||||||  |||| |||||||||   ||| | ||||| || ||| |||||||||||||||||   |    
T  54346231 gcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggagatattccaccaccccatttactcctttgga 54346132  T
Q  158 aattggtaagaatgcgc 174  Q
    |||| ||||||||||||    
T  54346131 aatttgtaagaatgcgc 54346115  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 7305808 - 7305900
Alignment:
Q  82 tgaagaataatttcatccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc 174  Q
    ||||||| | |||||||  |||| |||||||||   ||||| |||||||| ||| || ||| |||||| ||||||||||| ||||||||||||    
T  7305808 tgaagaacagtttcatcttcatttccacaacacgggcaagtaggagagattccaccatcccgtttacttcttcaaaaatttgtaagaatgcgc 7305900  T

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