View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_low_8 (Length: 290)
Name: NF2974_low_8
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 52472483 - 52472212
Alignment:
| Q |
18 |
gaaagtatatgtgggaaagttggaaagatgaagaagatatatctactactactagacattgatctattagaagaaagaaggagatgatcatagagtcaca |
117 |
Q |
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| T |
52472483 |
gaaagtatatgtgggaaagttggaaagatgaagaagatatatctacta------gacattgatctattagaagaaagaaggagatgatcatagagtcaca |
52472390 |
T |
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| Q |
118 |
accaatggaaaacgctaaaaaa--cggtgattctgtttggtgaggtagaggtaaacattgaagcctttgt---ataatacttaagtggaattgacattat |
212 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52472389 |
accaatggaaaacgctaaaaaaaacggtgattctgtttggtgaggtagaggtaaacattgaagcctttgtgtaataatacttaagtggaattgacattat |
52472290 |
T |
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| Q |
213 |
ttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaatatgttgagaagctctcagcataa |
290 |
Q |
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| T |
52472289 |
ttttagagtgggttgcttgcagaccatcggaaaggtcgtggtgaattggaaaaatatgttgagaagctctaagcataa |
52472212 |
T |
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