View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2974_low_9 (Length: 260)
Name: NF2974_low_9
Description: NF2974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2974_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 52472168 - 52471937
Alignment:
| Q |
3 |
tgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggctaacaaaagaagggtgagtttctgtctaaacagca |
102 |
Q |
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| T |
52472168 |
tgagactgcctccttctataccttgctgaatggtgttactaagaaggatggggttttaaattggctaacaaaagaagggtgagtttctgtctaaacagca |
52472069 |
T |
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| Q |
103 |
gcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccaccacactcagcctatattctctcccaatgttgggc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472068 |
gcaagcagacatgacagttactatacggtgttaaaagagatcacaaaacacgtctcactgtaccaccacactcagcctatattctctcccaatgttgggc |
52471969 |
T |
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| Q |
203 |
ttccaagggcctcaatccaacacttggaccat |
234 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52471968 |
ttccaagggcctcaatccaacacttggaccat |
52471937 |
T |
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