View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2975_high_13 (Length: 359)
Name: NF2975_high_13
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 4764905 - 4764561
Alignment:
| Q |
11 |
cataggagaacataagagagataataacaccttttgttcttgtaatgaaaatgtatatgatgcca--------------ggatcacgggatcataacatg |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4764905 |
cataggagaacataagagagataataacaccttttgttcttgtaatgaaa-tgtatatgatgccaattggaaaagaaagggatcacgggatcataacatg |
4764807 |
T |
|
| Q |
97 |
atccgaggnnnnnnngaaagtggaagcaccttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaaccacagcagaatc |
196 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4764806 |
atccgaggaagaaaagaaagtggaagcaccttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaaccacaacagaatc |
4764707 |
T |
|
| Q |
197 |
cctcacaagggagcggcgacactaaccctaggagcggcggannnnnnnccagtcatataannnnnnnnataaaattcaaatcatttatttcttaatcgtc |
296 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4764706 |
cctcacaagggagtggcgacgctaaccctaggagcggcggctttttttccagtgatataa-tttttttataaaattcaaatcatttatttcttaatcgtc |
4764608 |
T |
|
| Q |
297 |
cttttatctagaagtgtttgagtggcattttgaatatgttaggtttt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4764607 |
cttttatctagaagtgtttgagtggcattttgaatatgttaggtttt |
4764561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 4670441 - 4670407
Alignment:
| Q |
279 |
atttatttcttaatcgtccttttatctagaagtgt |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
4670441 |
atttatttcttaattgtccttttatctagaagtgt |
4670407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 19061253 - 19061338
Alignment:
| Q |
152 |
aaaacgttaagaggagcagatatctcaccaaaccacagcagaatccctcacaaggg-agcggcgacactaaccctaggagcggcgg |
236 |
Q |
| |
|
|||||||| || |||| ||| |||||| | ||| || ||| ||||||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
19061253 |
aaaacgttcaggggagaagaaatctcaacgaacgacggcaaaatccctcacaagggtagcggcggcaagaaccctaggagcggcgg |
19061338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University