View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_high_15 (Length: 325)

Name: NF2975_high_15
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_high_15
NF2975_high_15
[»] chr7 (4 HSPs)
chr7 (17-307)||(21235491-21235781)
chr7 (95-149)||(39415136-39415190)
chr7 (96-149)||(12845175-12845228)
chr7 (109-176)||(3203030-3203095)
[»] chr4 (3 HSPs)
chr4 (105-183)||(18751412-18751487)
chr4 (38-76)||(30563829-30563867)
chr4 (15-76)||(653608-653669)
[»] chr3 (2 HSPs)
chr3 (19-76)||(27604568-27604625)
chr3 (15-76)||(2616923-2616984)
[»] chr5 (2 HSPs)
chr5 (15-76)||(7805693-7805754)
chr5 (15-76)||(13582094-13582155)
[»] chr1 (1 HSPs)
chr1 (16-76)||(14724927-14724987)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 21235491 - 21235781
Alignment:
Q  17 taagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccacttttcaacgtggaataatatgctttatcctgaatttgggaactc 116  Q
    |||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21235491 taagtgtttatataagtgaggggtgacctccaagggtgttccctttgggtatccacttttcaacgtggaataatatgttttatcctgaatttgggaactc 21235590  T
Q  117 actgagattgcagtatctcattccactttgttgttttcttttttcaggtataagctattttgaagtcaatcggctccatatcacaatctctagagcttag 216  Q
    ||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21235591 actcagatcacagtatctcattccactttgttgttttcttttttcaggtataagctattttgaagtcaatcggctccatatcacaatgtctagagcttag 21235690  T
Q  217 ggttcttatttttactttaatgtttccctcatttgtaagaggacatcaaatggtatttaagttctatgttagttttaaaacctcgtgcttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  21235691 ggttcttatttttactttaatgtttccctcatttgtaagaggacatcaaatggtatttaagttctattttagtttcaaaaccttgtgcttc 21235781  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 39415136 - 39415190
Alignment:
Q  95 tttatcctgaatttgggaactcactgagattgcagtatctcattccactttgttg 149  Q
    ||||||| || ||||||||||||||||||| | |||||||||| ||||| |||||    
T  39415136 tttatcccgagtttgggaactcactgagatcgtagtatctcatcccactctgttg 39415190  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 12845228 - 12845175
Alignment:
Q  96 ttatcctgaatttgggaactcactgagattgcagtatctcattccactttgttg 149  Q
    |||||| || ||||||||||||||||||| | |||||||||| ||||| |||||    
T  12845228 ttatcccgagtttgggaactcactgagatcgtagtatctcatcccactatgttg 12845175  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 3203030 - 3203095
Alignment:
Q  109 gggaactcactgagattgcagtatctcattccactttgttgttttcttttttcaggtataagctattt 176  Q
    |||||||||||||||||| |||  ||||| ||||| | |||||| |  ||||||||||||||||||||    
T  3203030 gggaactcactgagattgtagtgcctcatcccactctcttgtttcc--ttttcaggtataagctattt 3203095  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 18751487 - 18751412
Alignment:
Q  105 atttgggaactcactgagattgcagtatctcattccactttgttgttttcttttttcaggtataagctattttgaagtc 183  Q
    |||| ||||||||||||||| |   |||||||| ||| | ||||| |||||||||||||||||||| ||||||||||||    
T  18751487 atttaggaactcactgagatcg---tatctcatcccattatgttgatttcttttttcaggtataagttattttgaagtc 18751412  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 30563829 - 30563867
Alignment:
Q  38 ggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  30563829 ggtgacctccaagggtgtgcccttggggtatccactttt 30563867  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 653669 - 653608
Alignment:
Q  15 agtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    |||||||||||| ||||| ||   ||||||||||| ||||| ||||||||||| ||||||||    
T  653669 agtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccactttt 653608  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 27604568 - 27604625
Alignment:
Q  19 agtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    |||||||| ||||||||| |||||||||||| |||||||||||| || | ||||||||    
T  27604568 agtgtttatataagtgagaggtgacctccaagggtgttcccttgtggcacccactttt 27604625  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 2616923 - 2616984
Alignment:
Q  15 agtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    |||||||||||| |||||||||  ||| ||| ||| ||||| ||||||||||| ||||||||    
T  2616923 agtaagtgtttatataagtgaggagtggcctacaacggtgtgcccttggggtacccactttt 2616984  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 7805754 - 7805693
Alignment:
Q  15 agtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    |||||||||||| ||||| ||   ||||||||||| ||||| ||||||||||| ||||||||    
T  7805754 agtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccactttt 7805693  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 13582094 - 13582155
Alignment:
Q  15 agtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    |||||||||||| ||||| ||   ||||||||||| ||||| ||||||||||| ||||||||    
T  13582094 agtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccactttt 13582155  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 14724987 - 14724927
Alignment:
Q  16 gtaagtgtttacataagtgagcggtgacctccaaaggtgttcccttggggtatccactttt 76  Q
    ||||||||||| ||||||| | |||||||| ||||| ||| || |||||||| ||||||||    
T  14724987 gtaagtgtttatataagtggggggtgacctacaaagatgtgccattggggtacccactttt 14724927  T

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