View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_high_18 (Length: 288)
Name: NF2975_high_18
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 9462486 - 9462243
Alignment:
| Q |
8 |
tgagatgaaaacaaaagccttttctaggttaaatatttagtcattaattattttggtaattacatcatatttggtttgatatgatcaatgtattgatttt |
107 |
Q |
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| T |
9462486 |
tgagatgaaaacaaaagccttttctaggttaaatatttagtcattaattattttggtaattacatcatatttggtttgatatgatcaatgtattgatttt |
9462387 |
T |
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| Q |
108 |
ctttgtagttacagaagaaataaaaaacaggtatttgatagttggtgattcttgtatttcagaagaaatgtctaattca--gtgtagttttccactaatt |
205 |
Q |
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| T |
9462386 |
ctttgtaattacagaagaaataaaaaacaggtatttgatagttggtgattcttgtatttcagaagaaatgtgaacttcagtgtgtagtttgctactaa-- |
9462289 |
T |
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| Q |
206 |
gttgtaaacttatgtgacatctatatttttccgacatataattagac |
252 |
Q |
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| T |
9462288 |
-ttttaagctcatgtatcatctctatttttccgacatataattagac |
9462243 |
T |
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