View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_high_19 (Length: 284)

Name: NF2975_high_19
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_high_19
NF2975_high_19
[»] chr2 (9 HSPs)
chr2 (12-269)||(43672630-43672888)
chr2 (77-269)||(38422321-38422513)
chr2 (56-242)||(90071-90258)
chr2 (135-269)||(14904264-14904398)
chr2 (63-233)||(25621714-25621884)
chr2 (208-268)||(6883516-6883576)
chr2 (56-235)||(29303349-29303531)
chr2 (58-123)||(6883608-6883673)
chr2 (56-194)||(19678251-19678391)
[»] chr4 (7 HSPs)
chr4 (57-264)||(20151943-20152150)
chr4 (14-269)||(13957477-13957732)
chr4 (14-231)||(10142410-10142627)
chr4 (56-268)||(25201539-25201751)
chr4 (109-269)||(42511429-42511587)
chr4 (135-233)||(51758740-51758838)
chr4 (56-235)||(51337824-51338006)
[»] chr6 (6 HSPs)
chr6 (59-235)||(4064979-4065153)
chr6 (63-269)||(11680515-11680721)
chr6 (56-222)||(14678952-14679116)
chr6 (135-269)||(1830921-1831055)
chr6 (63-242)||(14677904-14678084)
chr6 (216-269)||(14679206-14679259)
[»] chr3 (5 HSPs)
chr3 (57-269)||(47185205-47185417)
chr3 (57-269)||(46947971-46948183)
chr3 (56-235)||(23044636-23044818)
chr3 (56-235)||(31884696-31884878)
chr3 (14-91)||(44879852-44879929)
[»] chr8 (6 HSPs)
chr8 (14-269)||(11648106-11648359)
chr8 (20-170)||(602130-602280)
chr8 (146-269)||(9381942-9382063)
chr8 (149-235)||(24683154-24683240)
chr8 (63-152)||(2878955-2879044)
chr8 (159-248)||(32073433-32073521)
[»] chr7 (7 HSPs)
chr7 (63-269)||(43178645-43178847)
chr7 (63-269)||(39038309-39038512)
chr7 (149-231)||(14573995-14574077)
chr7 (56-235)||(6189143-6189325)
chr7 (56-235)||(48636875-48637057)
chr7 (56-194)||(6195659-6195799)
chr7 (14-126)||(14574083-14574195)
[»] chr1 (6 HSPs)
chr1 (14-257)||(47397119-47397367)
chr1 (14-198)||(12028057-12028240)
chr1 (208-269)||(12783791-12783852)
chr1 (56-235)||(36296875-36297057)
chr1 (56-235)||(42722410-42722592)
chr1 (56-194)||(28945551-28945691)
[»] chr5 (6 HSPs)
chr5 (56-242)||(14651480-14651666)
chr5 (14-269)||(43171015-43171268)
chr5 (56-268)||(5120565-5120778)
chr5 (56-235)||(7850487-7850669)
chr5 (200-269)||(23318181-23318250)
chr5 (135-235)||(26402141-26402241)
[»] scaffold0178 (1 HSPs)
scaffold0178 (208-269)||(1044-1105)
[»] scaffold0385 (1 HSPs)
scaffold0385 (112-177)||(911-976)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 43672630 - 43672888
Alignment:
Q  12 agagactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctct 111  Q
    |||||||||||||||||||||||||||||||||||||       | |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43672630 agagactgaaattttagcaactgggaataataacaccaaaaaaattaaagaatatcaacacttatttaattaaattttaactttttggatatagacctct 43672729  T
Q  112 ccaatatt-aaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaag 210  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  43672730 ccaatatttaaacccataacatcaataatacttgatacaaaatcagtattagactttttagaggaatcaaagataccgtaactcctttatatgttacaag 43672829  T
Q  211 tacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43672830 tacatcattcctctttttatatgctgcaagtatttctatcaaattcattgtgatgatac 43672888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 269
Target Start/End: Original strand, 38422321 - 38422513
Alignment:
Q  77 ttaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaa 176  Q
    |||||||||||||| | ||||||||  |||| |||||||||| |||||||| |||   ||| |||||||||||||| |||| ||||||||||||||||||    
T  38422321 ttaattaaattttagccttttggatgcagacttctccaatatcaaacccataacaataatattacttgatacaaaaccagtgttagactttttagaagaa 38422420  T
Q  177 taaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    | ||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  38422421 tcaaagatactagaactcctttatatgttacaagtacatcattcctctttttatatgctacaagtatctctatcaagttcattgtgatgatac 38422513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 90071 - 90258
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatca 155  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  |||||||| |||||||||| ||| | ||||||||||||| ||||  |    
T  90071 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaaa 90170  T
Q  156 -gtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagta 242  Q
     || ||| | ||||||||  |||  |||||||| |||||| ||| |||  ||||| || |||||||||||||||||||||| ||||||    
T  90171 tgtgttaaattttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatatgctacaagta 90258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 269
Target Start/End: Complemental strand, 14904398 - 14904264
Alignment:
Q  135 ataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgc 234  Q
    ||||||| ||||||||||| | | ||||| ||||||||||||| | ||| ||| |||||| |||||||  || ||||| |||| |||||||||||||||     
T  14904398 ataatacatgatacaaaattattgttagattttttagaagaatcatagaaacaataactcatttatatactataagtatatcactcctctttttatatgt 14904299  T
Q  235 tgcaagtatttctatcaagttcattgtgatgatac 269  Q
    |  |||||| |||| |||||||||| |||||||||    
T  14904298 tataagtatctctaacaagttcattatgatgatac 14904264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 25621884 - 25621714
Alignment:
Q  63 atatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcagtattag 162  Q
    |||||||||| |||||| |||||||||||  |||||||   | |  |||||||| |||||| ||| ||| | ||||||| ||||||||||| ||| ||||    
T  25621884 atatcaacacgtaattagttaaattttaaacttttggaagcaaaattctccaatgttaaactcataacaacaataatacatgatacaaaattagtgttag 25621785  T
Q  163 actttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatg 233  Q
    || ||||||| |||| | | ||||| |||||| ||| |||  |  ||||||||||||||||||||| ||||    
T  25621784 accttttagaggaatcataaatacaataactcatttgtatactggaagtacatcattcctctttttctatg 25621714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 6883576 - 6883516
Alignment:
Q  208 aagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgata 268  Q
    |||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||||||    
T  6883576 aagtacatcattcctctttttatatgctacaagtatctctaacaagttcattatgatgata 6883516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 29303531 - 29303349
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  29303531 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaattctaaacacataacaacaataatacttgataaacaaaat 29303432  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  29303431 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 29303349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 6883673 - 6883608
Alignment:
Q  58 aaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaac 123  Q
    |||| |||||||||| |||||||||||||||||| |||||||||| | |  |||||||| ||||||    
T  6883673 aaagtatatcaacacataattaattaaattttaaatttttggatagaaaattctccaatgttaaac 6883608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 19678391 - 19678251
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  19678391 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 19678292  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactc 194  Q
     ||| ||| | ||||||||  |||  |||||||| ||||||    
T  19678291 tagtgttaaattttttagagtaatctaagatacaataactc 19678251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 264
Target Start/End: Original strand, 20151943 - 20152150
Alignment:
Q  57 aaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcag 156  Q
    |||||| ||||||||||||||||||||||||||| | ||| |||  ||||  ||||||||||||||||||| ||| | | |||| ||||||||||| ||     
T  20151943 aaaagattatcaacacttaattaattaaattttagcctttcggacgtagaattctccaatattaaacccataacaacaacaatagttgatacaaaaccaa 20152042  T
Q  157 tattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttc 256  Q
    | ||| |||||||||| |||||||| || ||  |||||||||||| |||||||||| ||||||| |||||||||||| | ||||||| |||||||||||     
T  20152043 tgttaaactttttagaggaataaaaaatgcaagaactcctttataagttacaagtatatcattcatctttttatatgttacaagtatctctatcaagttt 20152142  T
Q  257 attgtgat 264  Q
    ||| ||||    
T  20152143 attttgat 20152150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 13957732 - 13957477
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctcc 113  Q
    |||||||||||| |||| ||  ||||||||| |||       |||||| |||||||||| ||||||| ||||||||||  ||||||||  | |  ||| |    
T  13957732 agactgaaatttgagcacctaagaataataataccaaaatagtaaaagtatatcaacacgtaattaactaaattttaaacttttggatgcaaaattcttc 13957633  T
Q  114 aatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtac 213  Q
    ||| |||||| ||| |||  |||||||| ||||||||||| ||| ||||| ||||||||  ||| | |||||||  || || ||| |||  || ||||||    
T  13957632 aatgttaaactcataacaatgataatacatgatacaaaattagtgttagagtttttagataaatcatagatacaagaagtcatttgtatactagaagtac 13957533  T
Q  214 atcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||||||||||||||||||  |||||| |||| |||||||||| |||||||||    
T  13957532 atcattcctctttttatatgctataagtatctctaacaagttcattatgatgatac 13957477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 10142627 - 10142410
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctcc 113  Q
    ||||||||||||||||| ||| |||||||||||||       |||||| |||||||||| ||||||| ||||||||||  ||||| ||  | |  |||||    
T  10142627 agactgaaattttagcacctgagaataataacaccaaaaaagtaaaagtatatcaacacgtaattaactaaattttaaacttttgaatgcaaaattctcc 10142528  T
Q  114 aatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtac 213  Q
    ||| ||||||  || ||| | ||||||| ||||||||||| ||| |||||||||||| | |||| | |||||||  ||||||||| |||  || | ||||    
T  10142527 aatgttaaactaataacaacaataatacatgatacaaaattagtgttagactttttaaaggaatcatagatacatgaactcctttgtatactagatgtac 10142428  T
Q  214 atcattcctctttttata 231  Q
    || |||||||||||||||    
T  10142427 atgattcctctttttata 10142410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 25201751 - 25201539
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatca 155  Q
    |||||| | |||| ||| ||| ||||||||||||||  |||| |||| | |  ||| |||| |||||| ||| ||| | |||||| |||||||||||| |    
T  25201751 taaaagtacatcatcacgtaagtaattaaattttaaacttttagatacaaaattcttcaatgttaaactcataacaacaataatatttgatacaaaatta 25201652  T
Q  156 gtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagtt 255  Q
    || ||||||||||||||  ||| | | || ||  ||||||||| ||||| | ||||||||||||||||| ||||||| |   ||||||||||| |||||     
T  25201651 gtgttagactttttagagaaatcataaatgcaagaactcctttgtatgtaagaagtacatcattcctctctttatataccataagtatttctaacaagtc 25201552  T
Q  256 cattgtgatgata 268  Q
    |||| ||||||||    
T  25201551 cattatgatgata 25201539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 269
Target Start/End: Original strand, 42511429 - 42511587
Alignment:
Q  109 tctccaatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttaca 208  Q
    |||||||| |||||| ||| ||| | ||||||| ||||||||||| ||| |||  |||||||||||||| | ||| |||  ||||| ||| |||  || |    
T  42511429 tctccaatgttaaactcataacaacaataatacatgatacaaaattagtgtta--ctttttagaagaatcatagacacaagaactcttttgtatactaga 42511526  T
Q  209 agtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||||||||||||||||||||| |  |||||| |||| |||||||||| | |||||||    
T  42511527 agtacatcattcctctttttatatgttagaagtatctctaacaagttcattataatgatac 42511587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 51758838 - 51758740
Alignment:
Q  135 ataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatg 233  Q
    ||||||| ||||||||||| ||| ||||||||||||||  |||  ||||||||  ||||||||| | || |  |||||||||||||| |||||||||||    
T  51758838 ataatacatgatacaaaattagtgttagactttttagagtaatctaagatacaagaactcctttgtttgcttgaagtacatcattccgctttttatatg 51758740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 51338006 - 51337824
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  51338006 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 51337907  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  51337906 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 51337824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 4064979 - 4065153
Alignment:
Q  59 aagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcagta 158  Q
    |||||||||||||||||||||||||||||||| | ||||||||  | |  |||||||||||||||||||  || | || ||||||||||||||| |||      
T  4064979 aagaatatcaacacttaattaattaaattttagccttttggatgcataattctccaatattaaacccatagcaacaattatacttgatacaaaaccagcg 4065078  T
Q  159 ttagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgct 235  Q
    |||  ||||||||| |||  |||||||||  ||||||||||||||||||||| |||||||||||| |||||||||||    
T  4065079 tta--ctttttagaggaaccaaagatacaagaactcctttatatgttacaagaacatcattcctcattttatatgct 4065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 269
Target Start/End: Original strand, 11680515 - 11680721
Alignment:
Q  63 atatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcagtattag 162  Q
    |||||||||| ||||||| ||||||||||  |||| |||  | |  |||||||| |||||| | | ||| | ||||||||||||||||||| | | ||||    
T  11680515 atatcaacacgtaattaactaaattttaaagttttagatgcaaaattctccaatgttaaactcctaacaacaataatacttgatacaaaattattgttag 11680614  T
Q  163 actttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtg 262  Q
    ||||||| || ||||   ||| | ||||||||| | ||||  || |||||||||||| |||||||||||||||  |||||| |||| |||||||||| ||    
T  11680615 acttttttgaggaatcttagacagagtaactccataatatactagaagtacatcattactctttttatatgctataagtatctctaacaagttcattatg 11680714  T
Q  263 atgatac 269  Q
    |||||||    
T  11680715 atgatac 11680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 14678952 - 14679116
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatca 155  Q
    |||||||||||||||||| ||||||| |||||||| | |||||||| ||||  ||| ||||||||||| ||||| | | ||||||||||||||||||  |    
T  14678952 taaaagaatatcaacact-aattaat-aaattttatccttttggatgtagaattcttcaatattaaacgcatgataacaataatacttgatacaaaacta 14679049  T
Q  156 gtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcct 222  Q
    || ||| | ||||||||||||| | |||| ||  | ||| |||||||||||||||| ||||||||||    
T  14679050 gtgttaaattttttagaagaatcagagatgcaaaatctcatttatatgttacaagtgcatcattcct 14679116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 269
Target Start/End: Complemental strand, 1831055 - 1830921
Alignment:
Q  135 ataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgc 234  Q
    ||||||| ||||||||||| ||| ||||||||||||||  ||| ||  |||||  | ||||||| |||| || |||| |||||||| ||||||||||||     
T  1831055 ataatacatgatacaaaattagttttagactttttagagtaatcaataatacaagagctcctttgtatgctagaagtgcatcattcatctttttatatgt 1830956  T
Q  235 tgcaagtatttctatcaagttcattgtgatgatac 269  Q
    |  ||||||||||| |||||||||| |||||||||    
T  1830955 tataagtatttctagcaagttcattatgatgatac 1830921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 14678084 - 14677904
Alignment:
Q  63 atatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatca-gtatta 161  Q
    ||||||| || |||||||||||||||||    |||||||| | |  |||||||| |||||||||| ||| | ||||||||||||| ||||  | || |||    
T  14678084 atatcaatacgtaattaattaaattttagacatttggatacaaaattctccaatgttaaacccataacaacaataatacttgataaaaaaaaatgtgtta 14677985  T
Q  162 gactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagta 242  Q
    || ||||||||  |||  |||||||| |||||| ||| |||  ||||| || |||||||||||||||||||||| ||||||    
T  14677984 gaatttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatatgctacaagta 14677904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 14679206 - 14679259
Alignment:
Q  216 cattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    |||||||||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  14679206 cattcctctttttatatgttacaagtatctctatcaaattcattgtgatgatac 14679259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 269
Target Start/End: Complemental strand, 47185417 - 47185205
Alignment:
Q  57 aaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcag 156  Q
    ||||| |||||||||  ||||||| ||||||||||   |||||||  | |  |||||||| |||||| ||| ||| | ||||| | ||||||||||| ||    
T  47185417 aaaagtatatcaacaagtaattaactaaattttaaacatttggatgcaaaattctccaatgttaaactcataacaacaataattcatgatacaaaattag 47185318  T
Q  157 tattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttc 256  Q
    | |||||||||||||| |||| | |||||||  ||||| ||| ||  ||| |||||||||||| |||||||||||||||  |||||| |||| |||||||    
T  47185317 tgttagactttttagaggaatcatagatacaagaactcttttgtacattataagtacatcatttctctttttatatgctataagtatctctaacaagttc 47185218  T
Q  257 attgtgatgatac 269  Q
    |||||||||||||    
T  47185217 attgtgatgatac 47185205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 269
Target Start/End: Complemental strand, 46948183 - 46947971
Alignment:
Q  57 aaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcag 156  Q
    |||||||||| |||| | |||||||||||||||    ||||||||  |||  | |||||||| |||| ||| ||| | |||||||||  ||||||| |||    
T  46948183 aaaagaatatgaacattaaattaattaaattttggtcttttggatgcagaattatccaatatcaaactcataacaacaataatactttgtacaaaa-cag 46948085  T
Q  157 tattagactttt-tagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagtt 255  Q
    | ||||| ||||  ||| |||| ||| ||||| |||||| |||||||||| ||||||  |||||| ||||||||||   |  | |||| |||| ||||||    
T  46948084 tgttagatttttgaagaggaatcaaacatacaataactcatttatatgtttcaagtatgtcattcatctttttataaaatagaggtatgtctaacaagtt 46947985  T
Q  256 cattgtgatgatac 269  Q
    ||||||||| ||||    
T  46947984 cattgtgattatac 46947971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 23044636 - 23044818
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  23044636 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 23044735  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  23044736 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 23044818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 31884696 - 31884878
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  31884696 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 31884795  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||| | ||||||||||||||    
T  31884796 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcatccatctttttatatgct 31884878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 44879929 - 44879852
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaa 91  Q
    ||||| ||||||||||| ||  |||||||||||||       |||||| |||||||||| ||||||| ||||||||||    
T  44879929 agactaaaattttagcacctaagaataataacaccaaacaagtaaaagtatatcaacacgtaattaactaaattttaa 44879852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 11648106 - 11648359
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctcc 113  Q
    ||||||||||||||||| ||  |||||||||||||       |||||| |||||||||| ||||||||||||||||||  ||||||||  | |   ||||    
T  11648106 agactgaaattttagcacctaagaataataacaccaaaaaagtaaaagtatatcaacacataattaattaaattttaaacttttggatgaaaaatactcc 11648205  T
Q  114 aatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtac 213  Q
    ||| |||||| ||| ||| | |||| |  ||||||||||| ||| || |||| |||||| |||| | ||||||| |||||||||| |||| || || |||    
T  11648206 aatgttaaactcataacaacaataaca--tgatacaaaattagtgtttgactctttagaggaatcatagatacaataactcctttgtatgctagaaatac 11648303  T
Q  214 atcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||||||||||||||  ||  |||||| |||| |||||||||| | |||||||    
T  11648304 atcattcctctttttataaactataagtatctctaacaagttcattataatgatac 11648359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 602130 - 602280
Alignment:
Q  20 aaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatatt 119  Q
    ||||||||||||||  |||||||||||||       |||||| |||||||||| ||||||||||||||||||  ||||||||  | |  |||  ||| ||    
T  602130 aaattttagcaactaagaataataacaccaaaaaagtaaaagtatatcaacacgtaattaattaaattttaaacttttggatggaaaattctaaaatgtt 602229  T
Q  120 aaacccatgacatcgataatacttgatacaaaatcagtattagacttttta 170  Q
    |||| ||| ||| | ||||||| ||| ||||||| ||| ||||||||||||    
T  602230 aaactcataacaacaataatacatgacacaaaattagtgttagacttttta 602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 9381942 - 9382063
Alignment:
Q  146 tacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtattt 245  Q
    |||||||| ||| |||||||||||||| |||| | |||||||  ||||| ||| ||| ||| ||||||||||||| | |||||||||||| || |||       
T  9381942 tacaaaattagtgttagactttttagaggaatcatagatacaagaactcttttgtatattagaagtacatcattcttatttttatatgctacaggta--g 9382039  T
Q  246 ctatcaagttcattgtgatgatac 269  Q
    ||| |||||||||| |||||||||    
T  9382040 ctaacaagttcattatgatgatac 9382063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 24683240 - 24683154
Alignment:
Q  149 aaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgct 235  Q
    ||||||| | ||||||||||||||  |||  ||||||||  ||||| ||| |||| |||||||| ||||||||||||||||||||||    
T  24683240 aaaatcaatgttagactttttagagtaatctaagatacaagaactcatttgtatgctacaagtaaatcattcctctttttatatgct 24683154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 2878955 - 2879044
Alignment:
Q  63 atatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaa 152  Q
    |||||||||| | |||||||||||||||    |||||||| | |  ||||||||||||||| ||| ||| | ||||||||||||| ||||    
T  2878955 atatcaacacgtcattaattaaattttagacatttggatacaaaattctccaatattaaactcataacaacaataatacttgataaaaaa 2879044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 32073521 - 32073433
Alignment:
Q  159 ttagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttcta 248  Q
    |||||||||||||| |||| | |||||||  ||||| ||| |||| || ||||||||||| ||| ||||||||||||  |||||| ||||    
T  32073521 ttagactttttagaggaatcatagatacaaaaactcatttgtatgctagaagtacatcatccct-tttttatatgctttaagtatctcta 32073433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 269
Target Start/End: Original strand, 43178645 - 43178847
Alignment:
Q  63 atatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcagtattag 162  Q
    |||||||||| ||||||||||||||||||  ||||||||| | |  |||||||| |||||| ||| |||   ||||||| | ||||||||| ||| ||||    
T  43178645 atatcaacacgtaattaattaaattttaaacttttggataaaaaaatctccaatgttaaactcataaca---ataatacat-atacaaaattagtgttag 43178740  T
Q  163 actttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtg 262  Q
    |||||||||| |||| | | |||||  ||||||||| |||| || |||||||||||| ||||||||||||| |  |||||| |||| ||| |||||| ||    
T  43178741 actttttagaggaatcacaaatacaagaactcctttgtatgctagaagtacatcatttctctttttatatgatataagtatctctaccaaattcattatg 43178840  T
Q  263 atgatac 269  Q
    |||||||    
T  43178841 atgatac 43178847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 269
Target Start/End: Original strand, 39038309 - 39038512
Alignment:
Q  63 atatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatcagtattag 162  Q
    |||||||||| ||||||||||||||||||  ||||||||  | | |   ||||| |||||| ||| ||| | ||||||| ||||||||||| ||| ||||    
T  39038309 atatcaacacgtaattaattaaattttaaacttttggatggaaatc---ccaatgttaaactcataacaacaataatacatgatacaaaattagtgttag 39038405  T
Q  163 actttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtg 262  Q
    |||||||||| ||||   | ||| |  ||||||||| |||| || |||||||||||||||||||||||||| |  |||||| |||| |||||| ||| ||    
T  39038406 actttttagaggaatcgtatatagaaaaactcctttgtatgctagaagtacatcattcctctttttatatgttataagtatctctaacaagtttattatg 39038505  T
Q  263 atgatac 269  Q
    |||||||    
T  39038506 atgatac 39038512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 231
Target Start/End: Complemental strand, 14574077 - 14573995
Alignment:
Q  149 aaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttata 231  Q
    |||| |||| |||||||||| ||| |||| |||||  ||  |||||||||||| |||||||||||||||||| ||||||||||    
T  14574077 aaaagcagtgttagacttttcagaggaatcaaagaggcaagaactcctttatacgttacaagtacatcattcttctttttata 14573995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Original strand, 6189143 - 6189325
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  6189143 taaaagtatatcaacacgtaattaattaaattttatacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 6189242  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  6189243 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 6189325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 48637057 - 48636875
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  48637057 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 48636958  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  48636957 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 48636875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 6195659 - 6195799
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| ||||||||||||||||||   |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  6195659 taaaagtatatcaacacgtaattaattaaattttaaacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 6195758  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactc 194  Q
     ||| ||| | ||||||||  |||  |||||||| ||||||    
T  6195759 tagtgttaaattttttagagtaatctaagatacaataactc 6195799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 14574195 - 14574083
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatc-aacacttaattaattaaattttaactttttggatatagacctctc 112  Q
    ||||||||||||||||| ||| |||||||| ||||       |||||||||||| ||||||| ||||||||||||||| | |||| |||  | |  ||||    
T  14574195 agactgaaattttagcacctgagaataatagcaccaaaaaaataaaagaatatcaaacactt-attaattaaattttagccttttagatgcataattctc 14574097  T
Q  113 caatattaaaccca 126  Q
    ||||||||||||||    
T  14574096 caatattaaaccca 14574083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 47397119 - 47397367
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctcc 113  Q
    ||||||||| | ||||| ||  |||||||||||||       |||||| |||||||||  |||||||||||||||||| |||||||||    |  |||||    
T  47397119 agactgaaactatagcacctaagaataataacaccaaaaaagtaaaagtatatcaacatataattaattaaattttaaatttttggatggtaaattctcc 47397218  T
Q  114 aatat-----taaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttaca 208  Q
    |||||     ||||| ||| ||| | | ||||| ||||||||||| ||| ||| |||||||||| |||| | | ||||| ||||||||||||||| || |    
T  47397219 aatataatgttaaactcataacaacaaaaatacatgatacaaaattagttttacactttttagaggaatcataaatacaataactcctttatatgctaga 47397318  T
Q  209 agtacatcattcctctttttatatgctgcaagtatttctatcaagttca 257  Q
    || ||||||||||||| ||||||||||  |||||| |||| ||||||||    
T  47397319 aggacatcattcctctctttatatgctataagtatctctaacaagttca 47397367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 12028240 - 12028057
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctcc 113  Q
    ||||||||||||||||| ||   ||||||||||||       |||||| ||||||| || ||||||| ||||||||||  ||||||||  | |  |||||    
T  12028240 agactgaaattttagcacctaaaaataataacaccaaaaaagtaaaagtatatcaaaacgtaattaactaaattttaaacttttggatgcaaaattctcc 12028141  T
Q  114 aatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactccttt 198  Q
    ||| |||||| ||| ||| | ||||||| ||||||||||| ||| |||||| ||||||| |||| | |||||||  |||||||||    
T  12028140 aatgttaaactcataacaacaataatacatgatacaaaattagtgttagac-ttttagaggaatcatagatacaagaactccttt 12028057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 12783791 - 12783852
Alignment:
Q  208 aagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||||||||||||||||||||||||  |||||| |||| |||||||||| |||||||||    
T  12783791 aagtacatcattcctctttttatatgctataagtatctctaacaagttcattatgatgatac 12783852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 36297057 - 36296875
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  36297057 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 36296958  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  36296957 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 36296875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 42722592 - 42722410
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  42722592 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 42722493  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  42722492 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 42722410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 28945551 - 28945691
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  28945551 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 28945650  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactc 194  Q
     ||| ||| | ||||||||  |||  |||||||| ||||||    
T  28945651 tagtgttaaattttttagagtaatctaagatacaataactc 28945691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 14651480 - 14651666
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatca 155  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  |||||||| |||||||||| ||| | ||||||||||||| ||||       
T  14651480 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaattttaaacccataacaacaataatacttgataaaaaaaat 14651579  T
Q  156 gtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgctgcaagta 242  Q
    || ||| | ||||||||  |||  |||||||| |||||| ||| |||  ||||| || |||||||||||||||||||||| ||||||    
T  14651580 gtgttaaattttttagagtaatctaagatacaataactcatttgtatactacaaataaatcattcctctttttatatgctacaagta 14651666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 43171015 - 43171268
Alignment:
Q  14 agactgaaattttagcaactgggaataataacaccnnnnnnntaaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctcc 113  Q
    |||||| |||||||||| ||  ||||||||||||        |||||| |||||||||| ||||||| ||||||||||  ||||||||  | |  |||||    
T  43171015 agactgtaattttagcacctaagaataataacacgaaaaaaataaaagtatatcaacacgtaattaactaaattttaaacttttggatgcaaaattctcc 43171114  T
Q  114 aatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtac 213  Q
    ||| |||||| | | |||   ||||||| | ||||||||| ||| ||||||||| |||| |||| | | |||||  ||||||||| ||   || ||||||    
T  43171115 aatgttaaactcgtaacaaaaataatacataatacaaaattagtgttagactttgtagaggaatcataaatacaagaactcctttgtacactagaagtac 43171214  T
Q  214 atcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||||| |||||||||| |  | |||| ||||  ||||||||| |||||||||    
T  43171215 atcattcctttttttatatgttataggtatctcta--aagttcattatgatgatac 43171268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 5120565 - 5120778
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgatacaaaatca 155  Q
    |||||| ||||||| || ||||||||||||||||||  ||||||||  | |  |||||||| |||  |  || ||| | ||||||| ||||||||||| |    
T  5120565 taaaagtatatcaatacgtaattaattaaattttaaacttttggatgaaaaattctccaatgtta--cttataacaacaataatacatgatacaaaatta 5120662  T
Q  156 gtattagactttttagaagaataaaagatacagtaact---cctttatatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaa 252  Q
    || ||||| |||||| | |||| | |||||||  ||||   | ||| |||| || ||||||| |||||||||||||||||| |  |||||| |||| |||    
T  5120663 gtgttagagtttttaaaggaatcatagatacaagaactgatcatttgtatgctagaagtacaccattcctctttttatatgatataagtatctctaacaa 5120762  T
Q  253 gttcattgtgatgata 268  Q
    ||||||| | ||||||    
T  5120763 gttcattataatgata 5120778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 235
Target Start/End: Complemental strand, 7850669 - 7850487
Alignment:
Q  56 taaaagaatatcaacacttaattaattaaattttaactttttggatatagacctctccaatattaaacccatgacatcgataatacttgat--acaaaat 153  Q
    |||||| |||||||||| |||||||||||||||||    |||||||| | |  ||||||||  ||||| ||| ||| | ||||||||||||  |||||||    
T  7850669 taaaagtatatcaacacgtaattaattaaattttagacatttggatacaaaattctccaatgctaaacacataacaacaataatacttgataaacaaaat 7850570  T
Q  154 cagtattagactttttagaagaataaaagatacagtaactccttt-atatgttacaagtacatcattcctctttttatatgct 235  Q
     ||| ||| | ||||||||  |||  |||||||| |||||| |||  |||  ||||| || ||||||| ||||||||||||||    
T  7850569 tagtgttaaattttttagagtaatctaagatacaataactcatttgttatactacaaataaatcattcatctttttatatgct 7850487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 23318181 - 23318250
Alignment:
Q  200 tatgttacaagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||| ||||||||||||||||||||||||| ||  |||||| | || |||||||||| |||| ||||    
T  23318181 tatgttagaagtacatcattcctctttttatatactataagtatctttaacaagttcattatgattatac 23318250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 26402241 - 26402141
Alignment:
Q  135 ataatacttgatacaaaatcagtattagactttttagaagaataaaagatacagtaactcctttatatgttacaagtacatcattcctctttttatatgc 234  Q
    ||||||| |||||||| || ||| ||| ||||||||||  ||| | || ||||  ||||||||| |||  || ||||| ||||||| |||||||||||||    
T  26402241 ataatacatgatacaacattagtgttacactttttagagaaatcataggtacaagaactcctttgtattctagaagtatatcattcttctttttatatgc 26402142  T
Q  235 t 235  Q
    |    
T  26402141 t 26402141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 1044 - 1105
Alignment:
Q  208 aagtacatcattcctctttttatatgctgcaagtatttctatcaagttcattgtgatgatac 269  Q
    ||||||||| ||||||||||||||||||  || ||| |||| |||||||||| |||||||||    
T  1044 aagtacatcgttcctctttttatatgctataattatctctaacaagttcattatgatgatac 1105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 976 - 911
Alignment:
Q  112 ccaatattaaacccatgacatcgataatacttgatacaaaatcagtattagactttttagaagaat 177  Q
    ||||| |||||| ||| ||| | ||||||| ||||||||||| ||| |||||||||||||| ||||    
T  976 ccaatgttaaactcataacaacaataatacatgatacaaaattagtgttagactttttagaggaat 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University