View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_high_23 (Length: 255)
Name: NF2975_high_23
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27743357 - 27743501
Alignment:
| Q |
1 |
tgaacagatacgtgctagaatggctaccagaaaatccatcagtcactcccccattgaaaaaataatgcagtaagaaaaggatgtcgaaatcacagatcat |
100 |
Q |
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| T |
27743357 |
tgaacagatacgtgctagaatggctaccagaaaatccatcagtcactcccccattgaaaaaataatgcagaaagaaaaggatgtcgaaatcacagatcat |
27743456 |
T |
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| Q |
101 |
atctctaggattggtaacaaagaactatcagatcctataaacatt |
145 |
Q |
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| T |
27743457 |
atctctaggattggtaacaaagaactatcagatcctataaacatt |
27743501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 27744742 - 27744829
Alignment:
| Q |
158 |
ccaatttttacgatgattatgtgaaatgagnnnnnnntaacagatctgttatcttacttaatcaagagaaaaagagagcttgcctatg |
245 |
Q |
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| T |
27744742 |
ccaatttttacgaagattatgtgaaatgagaaaaaaataacagatctgttatcttacttaatcaagagaaaaagagagcatgcctatg |
27744829 |
T |
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