View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2975_high_27 (Length: 250)
Name: NF2975_high_27
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_27 |
 | |
|
| [»] scaffold0553 (1 HSPs) |
| | |
|
| [»] scaffold0086 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0553 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7321 - 7137
Alignment:
| Q |
1 |
attttgattcgatgaatttgcaaggtaatatatacttttcatacatgtaacagattagtttcaaaagaaatttaatcaataagaaaaggaagtagtaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7321 |
attttgattcgatgaatttgcaaggtaatatatacttttcatacatgtaacaacttagtttcaaaagaaatttaatgaataagaaaaggaagtagtaaca |
7222 |
T |
|
| Q |
101 |
taacttagtgtttgcaaatattcatttaaaaattcattatattgagggaatgttcaatcaggcgtgtttaatcaagggaatggga |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7221 |
taacttagtgtttgcaaatattcatttaaaaattcattatattgaaggaatgttcaatcaggcgtgtttaatcaagggaatggga |
7137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 15603236 - 15603052
Alignment:
| Q |
1 |
attttgattcgatgaatttgcaaggtaatatatacttttcatacatgtaacagattagtttcaaaagaaatttaatcaataagaaaaggaagtagtaaca |
100 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15603236 |
atttttattagatgaatttgcaaggtaatatatacttttcatacatgtaacagcttagtttcaaaagaaatttattcaataagaaaaggaagtagtaaca |
15603137 |
T |
|
| Q |
101 |
taacttagtgtttgcaaatattcatttaaaaattcattatattgagggaatgttcaatcaggcgtgtttaatcaagggaatggga |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603136 |
taacttagtgtttgcaaatattcatttaaaaattcattatattgagggaatgttcaatcaggcgtgtttaatcaagggaatggga |
15603052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 41973 - 42152
Alignment:
| Q |
1 |
attttgattcgatgaatttgcaaggtaatatatacttttcatacatgtaacagattagtttcaaaagaaatttaatcaataagaaaaggaagtagtaaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41973 |
attttgattagatgaatttgcaaggaaatatatacttttcatacatgtaacaacttagtttcaaaagaaatttaataaataagaaaaggaagtagtaaca |
42072 |
T |
|
| Q |
101 |
taacttagtgtttgcaaatattcatttaaaaattcattatattgagggaatgttcaatcaggcgtgtttaatcaagggaatg |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42073 |
taacttagtgtttgcaaatattcatttaaaa--tcattatattgagggaatgttcaatcagacgtgtttaatcaagggaatg |
42152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37264 - 37394
Alignment:
| Q |
1 |
attttgattcgatgaatttgcaaggtaatatatacttttcatacatgtaacagattagtttcaaaagaaatttaatcaataagaaaaggaagtagtaaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37264 |
attttgattagatgaatttgcaaggcaatatatacttttcatacatgtaacagcttagtttcaaaagaaatttactcaataagaaaaggaagtagtaaca |
37363 |
T |
|
| Q |
101 |
taacttagtgtttgcaaatattcatttaaaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37364 |
taacttagtgtttgcaaatattcatttaaaa |
37394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Original strand, 20281384 - 20281418
Alignment:
| Q |
209 |
aagtgcaatgagttttgagttcgttttctctgctc |
243 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
20281384 |
aagtgcaatgagttctgagttcgttttctctgctc |
20281418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 243
Target Start/End: Original strand, 11893684 - 11893717
Alignment:
| Q |
210 |
agtgcaatgagttttgagttcgttttctctgctc |
243 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
11893684 |
agtgcaatgagttctgagttcgttttctctgctc |
11893717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University