View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_high_33 (Length: 227)
Name: NF2975_high_33
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31641318 - 31641538
Alignment:
| Q |
1 |
caaggagtcaccaccatttcctccaccgttggtaaggccaagaaagtccctagtgagaccatcgtcgttctttccggtgagacagcctctcatgttgtta |
100 |
Q |
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| T |
31641318 |
caaggagtcaccaccatttcctccaccgttggtaaggccaagaaagtccctagtgagaccatcgtcgttctttccggtgagacagcctctcatgttgtta |
31641417 |
T |
|
| Q |
101 |
atgtagtgatcaactgagtctagctgagtcactgatccaaactggccaatgctgagctgagaagtttgatggtgactcattgttggttggcttcctgtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31641418 |
atgtagtgatcaactgagtctagctgagtcactgatccaaactggccaatgctgagctgagaggtttgatggtgactcattgttggttggcttcctgtga |
31641517 |
T |
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| Q |
201 |
tggcggccgcaccgacggttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31641518 |
tggcggccgcaccgacggttg |
31641538 |
T |
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