View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_high_38 (Length: 215)
Name: NF2975_high_38
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 13851570 - 13851427
Alignment:
| Q |
61 |
cttccaataatagagtgactacagaagttatttagctcgtaattattaccaaaagctaaagaaagcatcaatttctgtacaatgttcgtggaggagcaca |
160 |
Q |
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| T |
13851570 |
cttccaataatagagtgactacagaagttatttagctcgtaattattaccaaaagctaaagaaagcatcaatttctgtacaatgttcgtggaggagaaca |
13851471 |
T |
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| Q |
161 |
aatgcgcgaagagaacttcgaaagcttataatggtttttcatct |
204 |
Q |
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| T |
13851470 |
aatgcgcgaagggaacttcgaaagcttagaatggtgtttcatct |
13851427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13850137 - 13850186
Alignment:
| Q |
1 |
tcataaatgataagttttacaaaaattttctatgtattgtttacattgag |
50 |
Q |
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| T |
13850137 |
tcataaatgataagttttacaaacattttctatgtattgtttaccttgag |
13850186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 22872278 - 22872342
Alignment:
| Q |
72 |
agagtgactacagaagttatttagctcgtaattattaccaaaagctaaagaaagcatcaatttct |
136 |
Q |
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| T |
22872278 |
agagtgactacaattgttatttagctcgtaattatttccaaaggctaaacaaagcatcaatttct |
22872342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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