View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2975_high_5 (Length: 441)
Name: NF2975_high_5
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_5 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0613 (1 HSPs) |
| | |
|
| [»] scaffold0638 (2 HSPs) |
| | |
|
| [»] scaffold0764 (1 HSPs) |
| | |
|
| [»] scaffold0313 (2 HSPs) |
| | |
|
| [»] scaffold0141 (1 HSPs) |
| | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 13904537 - 13904269
Alignment:
| Q |
19 |
gagtcgattctttcatgaatcgattcaaagagatgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13904537 |
gagtcgattctttcatgaatcgattcaaagagatgtgaatcgattcacctgaagtcagagacttagatgaattgattcattgtgtgttgaatcaattcaa |
13904438 |
T |
|
| Q |
119 |
gatgacaaaagatgaactaagacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13904437 |
gatgacaaaagatgaactaagacacttttacacgagacacaagtgaaccctagactaagacacattgattctgggtgctttaacatgctaaccataaggc |
13904338 |
T |
|
| Q |
219 |
aatcattaaaatgataaactaagctaaggaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13904337 |
aatcattaaaatgataaactaagctaggggacatcatcaaaaacatataaagtaaaacagtgtaggctt |
13904269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 13079751 - 13079706
Alignment:
| Q |
33 |
atgaatcgattcaaagagatgtgaatcgattcacctgaagtcagag |
78 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
13079751 |
atgaatcgattcaaatagatgtgaatcgattcacataaagtcagag |
13079706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 39 - 287
Target Start/End: Complemental strand, 19764847 - 19764599
Alignment:
| Q |
39 |
cgattcaaagagatgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaa |
138 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||| |||||||| ||||||||| || ||||| ||| || |||||| |||||| ||| |||||||||||| | |
|
|
| T |
19764847 |
cgattcaaggagttgtgaatcgattcatctgtagtcagagacttagatgagtcgattcagtgtatgatgaatcgattcaatatgccaaaagatgaacaat |
19764748 |
T |
|
| Q |
139 |
gacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaact |
238 |
Q |
| |
|
||||||||| ||| |||| ||||| || ||||||| ||||||||| ||| |||||||||||| ||||||||||| ||||| | | ||| |||||||| |
|
|
| T |
19764747 |
gacactttttcacaagacgcaagttaatcctagaccaagacacatagatgttgggtgctttaacatgctaaccatattgcaattaatgaaacgataaact |
19764648 |
T |
|
| Q |
239 |
aagctaaggaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
|| |||| ||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
19764647 |
aaactaaagaacatcataaaaaacatataaagtaaaactttgtaggctt |
19764599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 287
Target Start/End: Original strand, 16740368 - 16740550
Alignment:
| Q |
106 |
tgaatcaattcaagatgacaaaagatgaactaagacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttg |
205 |
Q |
| |
|
||||||||||||| | | ||||||||||| | ||||||||| ||| | ||||||||||| || |||| ||||||||| ||| |||||||||||| | |
|
|
| T |
16740368 |
tgaatcaattcaacaagtgaaaagatgaacaatgacacttttgcacaaaacacaagtgaatccaagaccaagacacatggatgttgggtgctttaacata |
16740467 |
T |
|
| Q |
206 |
ctaaccataaggcaatcattaaaatgataaactaagct-aaggaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
|||| || || ||||| | |||| ||||||| ||||| || ||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
16740468 |
ctaaacactagacaatcttcaaaacgataaacaaagctaaaaaaacattataaaaaacatataaagtaaaaatgtgtaggctt |
16740550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 40 - 287
Target Start/End: Complemental strand, 16968944 - 16968693
Alignment:
| Q |
40 |
gattcaaagagatgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaag |
139 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||| ||| ||||| || ||||| ||| || |||||| |||||| | | |||||||||||| | | |
|
|
| T |
16968944 |
gattcaaggagttgtgaatcgattcatttgaagtcagagacttggatgagtctattcagtgtatgatgaatcgattcaacaagccaaaagatgaacaatg |
16968845 |
T |
|
| Q |
140 |
acacttttacacgagacacaagtgaaccctagactaagac----acattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataa |
235 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||| ||||| |||| ||| | |||||||||||| ||||||||| |||| ||| || |||| ||||| |
|
|
| T |
16968844 |
acacttttttacaagacacaagtgaatcctagacaaagacgtacacatagatgctgggtgctttaacatgctaaccacaaggtaattataaaaaagataa |
16968745 |
T |
|
| Q |
236 |
actaagctaaggaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
16968744 |
acaaagctaaagaacatcatcaaaaacatataaagtaaaagagtgaaggctt |
16968693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 24749002 - 24748814
Alignment:
| Q |
59 |
cgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaagacacttttacacgagacac |
158 |
Q |
| |
|
||||||| || ||||||||| ||| |||||||| ||||| |||||||| || |||||||| | |||||||||||| |||||||||| || ||||||| |
|
|
| T |
24749002 |
cgattcatcttaagtcagagacttggatgaatcgattcaaattgtgttgagtcgattcaagaagctaaaagatgaactcagacactttttcaagagacac |
24748903 |
T |
|
| Q |
159 |
aag-tgaaccctagactaagacacattgatt-cagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaa |
245 |
Q |
| |
|
|| ||| || |||| || |||||| |||| | |||||||||||| ||||| |||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
24748902 |
aaaatgatccaaagaccaacacacatagatttctgggtgctttaacatgctagtcataagacaatcatcaaaaagataaactaagctaa |
24748814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 25975224 - 25975309
Alignment:
| Q |
191 |
gggtgctttaacttgctaaccataaggcaatcatta-aaatgataaactaagctaaggaacatcatcaaaaacatataaagtaaaa |
275 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| | || |||||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
25975224 |
gggtgctttaacatgctaaccataatgcaatgaatagaaatgataaactaaactaaagaacatcatcaaaaatatataaagtaaaa |
25975309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 25731766 - 25731691
Alignment:
| Q |
350 |
aatttttcctctagaaaattgatttttaattaggaatgcgctcagtctttcata-caagctccagtagcttgttta |
424 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||| |||| ||| ||||||||||| ||| ||| || |||||||||| |
|
|
| T |
25731766 |
aatttttcctctaaaaaattcattttcaattagaaatgtgcttagtctttcatatcaaactctaggagcttgttta |
25731691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 14958029 - 14957989
Alignment:
| Q |
247 |
gaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
14958029 |
gaacatcatcaaaaacatataaagtaagactatgtaggctt |
14957989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 266
Target Start/End: Complemental strand, 17443551 - 17443523
Alignment:
| Q |
238 |
taagctaaggaacatcatcaaaaacatat |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17443551 |
taagctaaggaacatcatcaaaaacatat |
17443523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 18814912 - 18814673
Alignment:
| Q |
40 |
gattcaaagagatgtgaatcgattcacctgaagtcagagtctta---gatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaact |
136 |
Q |
| |
|
||||||| ||| |||||||||||||| || |||||||| |||| ||||| || ||||| ||| || |||| |||||| ||| | ||||||||| |
|
|
| T |
18814912 |
gattcaaggagttgtgaatcgattcatttgtagtcagagacttattagatgattcgattcaatgtctgaagaatagattcaatatgctacaagatgaaca |
18814813 |
T |
|
| Q |
137 |
aagacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaa |
236 |
Q |
| |
|
| ||||||||| || ||||||||||||| ||||||| | ||||||| ||| |||| ||||||| |||||| ||||||||||| |||||||||||||| |
|
|
| T |
18814812 |
atgacactttttcataagacacaagtgaatcctagaccaggacacatagatgttgggtcctttaacatgctaatcataaggcaattattaaaatgataaa |
18814713 |
T |
|
| Q |
237 |
ctaagctaaggaacatcatcaaaaacatataaagtaaaac |
276 |
Q |
| |
|
|| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
18814712 |
ctgagctaaagaacatcataaaaaacatataaagtaaaac |
18814673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 18427204 - 18427248
Alignment:
| Q |
243 |
taaggaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
18427204 |
taaggaacatcatcaaaaacatataaagtaaacctatgtaggctt |
18427248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 22912296 - 22912332
Alignment:
| Q |
234 |
aaactaagctaaggaacatcatcaaaaacatataaag |
270 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22912296 |
aaactaaactaagaaacatcatcaaaaacatataaag |
22912332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 274
Target Start/End: Complemental strand, 1375863 - 1375695
Alignment:
| Q |
106 |
tgaatcaattcaagatgacaaaagatgaactaagacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttg |
205 |
Q |
| |
|
|||||| |||||| ||| |||||||||||| | ||||||||| ||| |||| ||||| || |||||| ||||||||| ||| || |||| |||| || |
|
|
| T |
1375863 |
tgaatcgattcaatatgccaaaagatgaacaatgacacttttgcacaagacgcaagtaaatcctagatcaagacacatagatgatggatgctataacatg |
1375764 |
T |
|
| Q |
206 |
ctaaccataaggcaatcattaaaatgataaactaagctaaggaacatcatcaaaaacatataaagtaaa |
274 |
Q |
| |
|
||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1375763 |
ctagccataaggcaattattaaaacgataaactaagctaaagaacatcatcaaaaacatataaagtaaa |
1375695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 424
Target Start/End: Original strand, 9540471 - 9540605
Alignment:
| Q |
290 |
acataaacttgaactataagtaaatgaattttatgcatttttctaaaaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgcg |
389 |
Q |
| |
|
||||| |||||||| |||||||| | | | ||||| |||||||||||| || |||| |||||||||||||| |||||| ||||| ||||| |||| | |
|
|
| T |
9540471 |
acatatacttgaacaataagtaagtcagtattatgtgtttttctaaaaa-gtgtggtatcaatttttcctcttgaaaatccattttcaattaaaaatgtg |
9540569 |
T |
|
| Q |
390 |
ctcagtctttcata-caagctccagtagcttgttta |
424 |
Q |
| |
|
| ||||| ||||| ||||||| || |||||||||| |
|
|
| T |
9540570 |
ttaagtctgtcataccaagctctaggagcttgttta |
9540605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 245
Target Start/End: Complemental strand, 21071230 - 21071039
Alignment:
| Q |
54 |
tgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaagacacttttacacga |
153 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||| |||||| |||| |||| || |||||| |||||||| |||||||| ||||||||| || || |
|
|
| T |
21071230 |
tgaatcgattcaccagaagtcagagacttggatgaatccattcatagtgtattgagtcgattcaaaatgacaaaggatgaactctgacactttttcatga |
21071131 |
T |
|
| Q |
154 |
gacacaagtgaaccctagactaagacacattga-ttcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaa |
245 |
Q |
| |
|
|||| ||| ||| || |||| ||||||||| || ||| |||||||||||| |||||| ||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
21071130 |
gacagaagagaatccaagaccaagacacatagatttctgggtgctttaacatgctaatcat-aggcaatcatcaaaaggataaactaagctaa |
21071039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 19194800 - 19194881
Alignment:
| Q |
192 |
ggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaaggaacatcatcaaaaacatataaagtaaa |
274 |
Q |
| |
|
||||||||||| ||||||||||||| || ||| |||| |||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
19194800 |
ggtgctttaacatgctaaccataagacatgcatcaaaa-gataaactaagctaagaaacataatcaaaaacatataaagtaaa |
19194881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 63214 - 63078
Alignment:
| Q |
139 |
gacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaact |
238 |
Q |
| |
|
||||||||| ||| ||| ||||||||| ||||||| ||||||||| ||| |||||||||||| |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
63214 |
gacactttttcacaagatacaagtgaatcctagaccaagacacatagatgttgggtgctttaacatgctaaccataaggcaattattaaaacaataaact |
63115 |
T |
|
| Q |
239 |
aagctaaggaacatcatcaaaaacatataaagtaaaa |
275 |
Q |
| |
|
| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
63114 |
aggctaaagagcatcatcaaaaacatataaagtaaaa |
63078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 52 - 274
Target Start/End: Complemental strand, 23999421 - 23999199
Alignment:
| Q |
52 |
tgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaagacacttttacac |
151 |
Q |
| |
|
|||||||||||||| || ||| |||| |||||||||||| ||||| ||| || ||| |||||||| ||| ||||||||||| | ||||||||| ||| |
|
|
| T |
23999421 |
tgtgaatcgattcatatgtagttagagacttagatgaatcgattcagtgtatgatgagtcaattcactatgctaaaagatgaacaatgacactttttcac |
23999322 |
T |
|
| Q |
152 |
gagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaaggaaca |
251 |
Q |
| |
|
|||| |||||||| ||||||| |||||| || || ||||||||| || |||||| |||||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
23999321 |
aagactcaagtgaaacctagaccaagacatataaatgttgggtgcttttacatgctaatcataaggcaactattaaaacaataaattaagctaaataaca |
23999222 |
T |
|
| Q |
252 |
tcatcaaaaacatataaagtaaa |
274 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
23999221 |
tcatcaaaaacataaaaagtaaa |
23999199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 274
Target Start/End: Complemental strand, 24000103 - 23999881
Alignment:
| Q |
52 |
tgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaagacacttttacac |
151 |
Q |
| |
|
|||||||||||||| || ||| |||| |||||||||||| ||||| ||| | ||| |||||||| ||| ||||||||||| | ||||||||| ||| |
|
|
| T |
24000103 |
tgtgaatcgattcatatgtagttagagacttagatgaatcgattcagtgtacgatgagtcaattcactatgctaaaagatgaacaatgacactttttcac |
24000004 |
T |
|
| Q |
152 |
gagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaaggaaca |
251 |
Q |
| |
|
|||| |||||||| ||||||| |||||| || || ||||||||| || |||||| |||||||||| ||||||| ||||| |||||||| |||| |
|
|
| T |
24000003 |
aagactcaagtgaaacctagaccaagacatataaatgttgggtgcttttacatgctaatcataaggcaactattaaaacaataaattaagctaaataaca |
23999904 |
T |
|
| Q |
252 |
tcatcaaaaacatataaagtaaa |
274 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
23999903 |
tcatcaaaaacataaaaagtaaa |
23999881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 52 - 274
Target Start/End: Complemental strand, 24000785 - 24000563
Alignment:
| Q |
52 |
tgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaagacacttttacac |
151 |
Q |
| |
|
|||||||||||||| || ||| |||| |||||||||||| ||||| ||| || ||| |||||||| ||| ||||||||||| | ||||||||| ||| |
|
|
| T |
24000785 |
tgtgaatcgattcatatgtagttagagacttagatgaatcgattcagtgtatgatgagtcaattcactatgctaaaagatgaacaatgacactttttcac |
24000686 |
T |
|
| Q |
152 |
gagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaaggaaca |
251 |
Q |
| |
|
|||| |||||||| ||||||| |||||| || || ||||||||| || |||||| |||||| ||| ||||||| ||||| ||| |||| |||| |
|
|
| T |
24000685 |
aagactcaagtgaaacctagaccaagacatataaatgttgggtgcttttacatgctaatcataagacaactattaaaacaataaattaaactaaataaca |
24000586 |
T |
|
| Q |
252 |
tcatcaaaaacatataaagtaaa |
274 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
24000585 |
tcatcaaaaacataaaaagtaaa |
24000563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 19959727 - 19959820
Alignment:
| Q |
189 |
cagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaaggaacatcatcaaaaacatataaagtaaaacagtgtag |
283 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||||| ||| |||||||||||||||||||||||||||| |||||| ||| | ||||||||||| |
|
|
| T |
19959727 |
cagggtgctttaacatgctagctataagacaatcatcaaaccgataaactaagctaaggaacatcatcaataacatagaaa-ttaaacagtgtag |
19959820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 19959582 - 19959627
Alignment:
| Q |
32 |
catgaatcgattcaaagagatgtgaatcgattcacctgaagtcaga |
77 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
19959582 |
catgaatcgattcaaatagatgtgaatcgattcacatgaagtcaga |
19959627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 25925978 - 25926024
Alignment:
| Q |
32 |
catgaatcgattcaaagagatgtgaatcgattcacctgaagtcagag |
78 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
25925978 |
catgaatcgattcaaatggatgtgaatcgattcacatgacgtcagag |
25926024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 25926180 - 25926216
Alignment:
| Q |
233 |
taaactaagctaaggaacatcatcaaaaacatataaa |
269 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
25926180 |
taaactaagctaaggaacatcataaaaaacaaataaa |
25926216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 260
Target Start/End: Complemental strand, 4714 - 4490
Alignment:
| Q |
34 |
tgaatcgattcaaagagatgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatga |
133 |
Q |
| |
|
|||||||||||||| | ||||||| |||||| ||| | |||||| ||||||||| || ||||| ||| || ||||||||||||| ||| ||||| |||| |
|
|
| T |
4714 |
tgaatcgattcaaaaggttgtgaattgattcatctgtaatcagagacttagatgagtcgattcagtgtatgatgaatcaattcaatatgccaaaatatga |
4615 |
T |
|
| Q |
134 |
actaagacacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgat |
233 |
Q |
| |
|
|| | ||||||||| ||| |||| |||||||| ||||||| ||||||||| ||| |||| ||||||| | || ||||| ||||| | ||||||||| |
|
|
| T |
4614 |
acaatgacactttt-cacaagactcaagtgaaacctagaccaagacacatagatgttgggtactttaac-agttagacataatgcaattaataaaatgat |
4517 |
T |
|
| Q |
234 |
aaactaagctaaggaacatcatcaaaa |
260 |
Q |
| |
|
|||||| |||| |||||||||||||| |
|
|
| T |
4516 |
aaactagactaaagaacatcatcaaaa |
4490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 27919917 - 27920034
Alignment:
| Q |
170 |
agactaagacacattgattcagggtgctttaacttgctaaccataaggcaatcattaaaatgataaactaagctaaggaacatcatcaaaaacatataaa |
269 |
Q |
| |
|
||||||| |||||| ||| | |||||| ||||| ||||||| |||||||||| ||||||| |||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
27919917 |
agactaaaacacatagatgctgggtgccttaacatgctaacaataaggcaattattaaaacgataaactaaactaaagaacatcaacaaaaacatataaa |
27920016 |
T |
|
| Q |
270 |
gtaaaacagtgtaggctt |
287 |
Q |
| |
|
||||||| ||| |||||| |
|
|
| T |
27920017 |
gtaaaactgtggaggctt |
27920034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 404
Target Start/End: Complemental strand, 17156526 - 17156413
Alignment:
| Q |
290 |
acataaacttgaactataagtaaatgaattttatgcatttttctaaaaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgcg |
389 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| |||||||| |||||| |||| |||||||||||||| ||||| ||||| ||||| |||| | |
|
|
| T |
17156526 |
acataaacttgaacaataagtaaatcaaaattatgtgtttttcta-aaaagtgtggtatcaatttttcctcttgaaaaaccattttcaattaaaaatgtg |
17156428 |
T |
|
| Q |
390 |
ctcagtctttcatac |
404 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
17156427 |
ctaagtctatcatac |
17156413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 2813 - 2653
Alignment:
| Q |
41 |
attcaaagagatgtgaatcgattcacctgaagtcagagtcttagatgaatcaattcattgtgtgttgaatcaattcaagatgacaaaagatgaactaaga |
140 |
Q |
| |
|
|||||| |||||||||||||||||| || | ||||||| || |||||| || ||||| ||||| |||||| |||||| ||| |||||||||||| | || |
|
|
| T |
2813 |
attcaaggagatgtgaatcgattcatctaatgtcagagactaagatgagtcgattcagtgtgttatgaatcgattcaacatgccaaaagatgaacaatga |
2714 |
T |
|
| Q |
141 |
cacttttacacgagacacaagtgaaccctagactaagacacattgattcagggtgctttaac |
202 |
Q |
| |
|
|||||| ||| |||||| ||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2713 |
-actttttcacacgacacaggtgaatcctagactaagacacatagatgttgggtgctttaac |
2653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 2657 - 2593
Alignment:
| Q |
224 |
ttaaaatgataaactaagct-aaggaacatcatcaaaaacatataaagtaaaacagtgtaggctt |
287 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||| |||||||| |||| ||||| |
|
|
| T |
2657 |
ttaacatgataaactaagcttaaagaacatcatcaaaaacatatatagtaaaactgtgtgggctt |
2593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0764 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0764
Description:
Target: scaffold0764; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 6155 - 6244
Alignment:
| Q |
336 |
aaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgcgctcagtctttcata-caagctccagtagcttgttta |
424 |
Q |
| |
|
|||||| |||| || ||||||||||| |||||| ||||||||||| ||||| ||| ||||| ||||| ||||||| || |||||||||| |
|
|
| T |
6155 |
aaaagtgtggtatctatttttcctcttgaaaatccatttttaattaagaatgagctaagtctatcataccaagctctaggagcttgttta |
6244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0313
Description:
Target: scaffold0313; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 465 - 376
Alignment:
| Q |
336 |
aaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgcgctcagtctttcata-caagctccagtagcttgttta |
424 |
Q |
| |
|
|||||| |||| || ||||||||||| |||||| ||||||||||| ||||| ||| ||||| ||||| ||||||| || |||||||||| |
|
|
| T |
465 |
aaaagtgtggtatctatttttcctcttgaaaatccatttttaattaagaatgagctaagtctatcataccaagctctaggagcttgttta |
376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0313; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 14622 - 14533
Alignment:
| Q |
336 |
aaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgcgctcagtctttcata-caagctccagtagcttgttta |
424 |
Q |
| |
|
|||||| |||| || ||||||||||| |||||| ||||||||||| ||||| ||| ||||| ||||| ||||||| || |||||||||| |
|
|
| T |
14622 |
aaaagtgtggtatctatttttcctcttgaaaatccatttttaattaagaatgagctaagtctatcataccaagctctaggagcttgttta |
14533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 30994 - 30863
Alignment:
| Q |
289 |
aacataaacttgaactataagtaaatgaattttatgcatttttctaaaaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgc |
388 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| ||||||| ||||||| |||| |||||||||||| | |||||| ||||| ||||| |||| |
|
|
| T |
30994 |
aacataaacttgaactataagtaagtcagagttatgtgtttttct-aaaaagtgtggtatcaatttttccttttgaaaatccattttcaattaaaaatgt |
30896 |
T |
|
| Q |
389 |
gctcagtctttcata-caagctccagtagcttg |
420 |
Q |
| |
|
||| ||||| ||||| ||||||| || |||||| |
|
|
| T |
30895 |
gctaagtctgtcataccaagctctaggagcttg |
30863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 83818 - 83949
Alignment:
| Q |
289 |
aacataaacttgaactataagtaaatgaattttatgcatttttctaaaaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgc |
388 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||| ||||||| ||||||| |||| |||||||||||| | |||||| ||||| ||||| |||| |
|
|
| T |
83818 |
aacataaacttgaactataagtaagtcagagttatgtgtttttct-aaaaagtgtggtatcaatttttccttttgaaaatccattttcaattaaaaatgt |
83916 |
T |
|
| Q |
389 |
gctcagtctttcata-caagctccagtagcttg |
420 |
Q |
| |
|
||| ||||| ||||| ||||||| || |||||| |
|
|
| T |
83917 |
gctaagtctgtcataccaagctctaggagcttg |
83949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 424
Target Start/End: Complemental strand, 153637 - 153548
Alignment:
| Q |
336 |
aaaagtatggtgtcaatttttcctctagaaaattgatttttaattaggaatgcgctcagtctttcata-caagctccagtagcttgttta |
424 |
Q |
| |
|
|||||| |||| || ||||||||||| |||||| ||||| ||||| ||||| ||| ||||| ||||| ||||||| || |||||||||| |
|
|
| T |
153637 |
aaaagtgtggtatctatttttcctcttgaaaatccattttcaattaagaatgtgctaagtctatcataccaagctctaggagcttgttta |
153548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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