View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_high_9 (Length: 388)
Name: NF2975_high_9
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 4130030 - 4129670
Alignment:
| Q |
18 |
aaggagaaactcttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4130030 |
aaggagaaactcttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaa |
4129931 |
T |
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| Q |
118 |
aactgcaacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129930 |
aactgcaacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccaca |
4129831 |
T |
|
| Q |
218 |
tctctaagaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4129830 |
tctctaagaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgagttgacacccgc |
4129731 |
T |
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| Q |
318 |
caaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129730 |
caaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
4129670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 4106842 - 4106483
Alignment:
| Q |
19 |
aggagaaactcttgttttcacaagtaccaattgtccaccactttgtgctcttccattagcaataggcaatcttttcttccaacaagtattgttattgaaa |
118 |
Q |
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|||||||||||||||||| | |||||| || | |||||||||| | ||||||||||||| | |||| ||||||||||||| ||| | | |||| |||| |
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| T |
4106842 |
aggagaaactcttgtttttataagtactaaattaccaccactttcttctcttccattagctagaggcgatcttttcttccagcaattttggttactgaag |
4106743 |
T |
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| Q |
119 |
actgcaacagcacacatgcaatcatgcaaacaagattgttgacaatcctgttgagaataaggttgcatcttttcataatctgataaaggccaatccacat |
218 |
Q |
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|| |||||| |||||| |||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||| ||||||| ||||| |
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| T |
4106742 |
acaacaacagaacacatacaatcatgcaaacaagattgttgacagtcatgttgagaataaggctgcatccgttcataatctgataatggccaattcacat |
4106643 |
T |
|
| Q |
219 |
ctctaagaacagtaaactcatataactcttctggcttcacattcaacccttcaccattattatctccacaaccaagtgtgaaattgacttgacacccgcc |
318 |
Q |
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| ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||| |
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| T |
4106642 |
ttgtaagaacagtaaactcatacaaatcttctggcttcacattcaatccttcaccattatcagctccacaaccaagtgtgaaattgagttgacacccgcc |
4106543 |
T |
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| Q |
319 |
aaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4106542 |
aaattgattacttggatctatcaacgaataaccataaggacatttacaagtaggtctctg |
4106483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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