View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_1 (Length: 800)
Name: NF2975_low_1
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 330 - 795
Target Start/End: Complemental strand, 52696156 - 52695706
Alignment:
| Q |
330 |
aaatcaacgtaaccaactagatctggtcaataaacttgattgtactgaaattactgatttcactgtttctaagtttaaaacggttattaacttgttaaat |
429 |
Q |
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| T |
52696156 |
aaatcaacttaaccaactagatctggtcaataaacttgattgtactgaaattactgatttcactgtttctaagtttaaaacggttattaacttgttaaat |
52696057 |
T |
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| Q |
430 |
cgaaccggtcacgctcgttttcgtcgtgcaccttcttctcct---tgctcttcttatcaatttcaatctcaatctcatattcaacctgagaaattcaaga |
526 |
Q |
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| T |
52696056 |
cgaaccggtcacgctcgttttcgtcgtgcaccttcttctcctccttgttcttcttatcaatttcaatctcaatctca------acctgagaaattcaaga |
52695963 |
T |
|
| Q |
527 |
ctcaaccacagtcaactactcttgattttgcaaaaccgattcaattagttaagtcaaatctaaatccaaatccaaatcccaatctcaaacctgaaactaa |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
52695962 |
ctcaaccacagtcaactactcttgattttgcaaaaccgattcaattagttaagtcaaatc------------caaatcccaatctcaaacctaaaactaa |
52695875 |
T |
|
| Q |
627 |
tcaatctactgatttatctgtttctcaatactccaaatcaaaggaagcttatagcatctctaccactacttcttctttcatgtccaccatcaccggagat |
726 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52695874 |
tcaatctactgatttatctgtttctcaatactccaaatcaaaggaagcttatagcatctctaccactacttcttctttcatgtccaccatcaccggagat |
52695775 |
T |
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| Q |
727 |
ggaagcgtttccgacggtaaaataggtcctatcatttcctctggcaagcctcctctagcttcatctcac |
795 |
Q |
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| T |
52695774 |
ggaagcgtttccgacggtaaaataggtcctatcatttcctctggcaagcctcctctagcttcatctcac |
52695706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 52696302 - 52696192
Alignment:
| Q |
190 |
aagatggttgtagatccggtagtgattccaaagttgaggatggatgaacaaagagctattcaagaagctgcttctgctggattgaaaagtatggagcaac |
289 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52696302 |
aagatggttgtagatccggtagttattccaaagttgaggatggatgaacaaagagctattcaagaagctgcttctgctggattgaaaagtatggagcaac |
52696203 |
T |
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| Q |
290 |
taattcgtgtg |
300 |
Q |
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||||||||||| |
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| T |
52696202 |
taattcgtgtg |
52696192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 52696501 - 52696403
Alignment:
| Q |
14 |
cattatgtacccttggattgacgatacttgtttgactttcccatcctccactcttttataaccagccctttctcttcttcaaccaaacacaaacctaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52696501 |
cattatgtacccttggattgacgatacttgtttgactttcccatcctccactcttttataaccaaccctttctcttcttcaaccaaacacaaacctaaa |
52696403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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