View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_11 (Length: 380)
Name: NF2975_low_11
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 125 - 345
Target Start/End: Complemental strand, 5023257 - 5023037
Alignment:
| Q |
125 |
agagtaaaattcaatcaacgttaagcacaagagtgtggaaagaaagtatcattgtaggaccatagcccttgatactgttcaaacaacattgcaatagaat |
224 |
Q |
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| T |
5023257 |
agagtaaaattcaatcaacgttaagcacaagagtgtggaaagaaagtatcattgtaggaccatagccctttctactgttcaaacaacattgcaatagcat |
5023158 |
T |
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| Q |
225 |
tagattatgttcatttcacaacctacatgaaactaaaacacnnnnnnnnngtctataatgaatattgtaatagtttcaatatatatatgttggctgatgg |
324 |
Q |
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| T |
5023157 |
tagattatgttcatttcacaacctacatgaacctaaaacacaaaaaaaaagtctataatgaatattgtaatagtttcaatatatatatgttggctgatgg |
5023058 |
T |
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| Q |
325 |
agatggaagtctactgtccta |
345 |
Q |
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| T |
5023057 |
agatggaagtctactgtccta |
5023037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 5023344 - 5023251
Alignment:
| Q |
5 |
aaatcccttcccaactaaagaaagcatccattcattccacttcattttttctgaagtcctccccttctaaactccaaacagaccttaagagtaa |
98 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5023344 |
aaatcccttcccaactaaagaaagcattcattcattccacttcattttttctgaagtcctccccttctaaactccaaacagaccttcagagtaa |
5023251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 5022635 - 5022602
Alignment:
| Q |
347 |
gtttcaagttacattttcctttaattggttttct |
380 |
Q |
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| T |
5022635 |
gtttcaagttacattttcctttaattggttttct |
5022602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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