View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_low_13 (Length: 359)

Name: NF2975_low_13

Description: NF2975

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2975_low_13

[»] chr1 (5 HSPs)

Alignment Details

Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 5)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 287; E-Value: 1e-161

Query Start/End: Original strand, 17 - 359

Target Start/End: Original strand, 30710003 - 30710345

Alignment:

Q	17	aaactgaacctcagtatttgaatggagaaattgtcagagatgacaatttagacctagtgaattaacaggnnnnnnntgcagctagaatttcaaagtagca	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30710003	aaactgaacctcagtatttgaatggagaaattgtcagagatgacaatttagacctagtgaattaacaggaaaaaaatgcagctagaatttcaaagtagca	30710102	T

Q	117	agcatatttgcaatatgccctagctgaataattaatgtcgtaaaaattgcaacnnnnnnnnncagaaagaaaattacaaacaaagttaattattagaagt	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30710103	agcatatttgcaatatgccctagctgaataattaatgtcgtaaaaattccaacaacaaaaaacagaaagaaaattacaaacaaagttaattattagaagt	30710202	T

Q	217	tggttaagcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgc	316	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30710203	tggttaagcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgc	30710302	T

Q	317	tgattcttgaaatttccctgctttaccctttgtactttttgac	359	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	30710303	tgattcttgaaatttccctgctttaccctttttactttttgac	30710345	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2

Raw Score: 66; E-Value: 4e-29

Query Start/End: Original strand, 224 - 305

Target Start/End: Original strand, 30671555 - 30671636

Alignment:

Q	224	gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat	305	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	30671555	gcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat	30671636	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 224 - 305

Target Start/End: Original strand, 30656394 - 30656475

Alignment:

Q	224	gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat	305	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	30656394	gcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat	30656475	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4

Raw Score: 58; E-Value: 2e-24

Query Start/End: Original strand, 224 - 305

Target Start/End: Original strand, 30689453 - 30689534

Alignment:

Q	224	gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat	305	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	30689453	gcttgtactttgattatcagatatggatagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat	30689534	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5

Raw Score: 54; E-Value: 6e-22

Query Start/End: Original strand, 224 - 305

Target Start/End: Original strand, 30698336 - 30698417

Alignment:

Q	224	gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat	305	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	30698336	gcttgaactttgattatcagatattgttagaagttgctcgagatattcaactcccaaatcctctaacaccaaaacacttgat	30698417	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]