View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_2 (Length: 751)
Name: NF2975_low_2
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_2 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0939 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 33357422 - 33357746
Alignment:
| Q |
14 |
atcatcattctacattattaataacctcaaataatgaagaaaactaagaacccttttataaagaacacaaaatcttcatcattcataaacaaaattggca |
113 |
Q |
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| T |
33357422 |
atcatcattctacattattaataacctcaaataatgaagaaaactaagaac---------------acaaaatcttcatcat----aaacaaaattggca |
33357502 |
T |
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| Q |
114 |
caatgcttggttttccaaacgtgatttgaagtgcttttcagagaaaagccaaaagctgatacattgaattgaacattgagattcatatgtttaagcttat |
213 |
Q |
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| T |
33357503 |
caatgcttggttttccaaacgtgatttgaagtgcttttcagagaaaagccaaaagctgatacattg-----aacattgaaattcatatgtttaagcttat |
33357597 |
T |
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| Q |
214 |
agaacaagaaattacctttagttaatgtggaactgaaagcaagaattcaatgccactgtgcattgaatgatgaagtatt-attataaaccattatcacca |
312 |
Q |
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| T |
33357598 |
agaacaagaaattacctttagttaatgtggaattgaaagcaagaattcaatgccactgtgcattgaatgaagtattattaattataaaccattatcacca |
33357697 |
T |
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| Q |
313 |
aatgctgaaatatattatgagaaatcaatcattgacatttgagagatga |
361 |
Q |
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| T |
33357698 |
aatgctgaaatatattatgagaattcaatcattgacatttgagagatga |
33357746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 414 - 517
Target Start/End: Original strand, 33357760 - 33357863
Alignment:
| Q |
414 |
gaaaacatattgtaacaaatacacgtggcagtgacacattactgcagatatcagctaccttgtaagtaacatcaatgtccaaaaataatattaaaataga |
513 |
Q |
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| T |
33357760 |
gaaaacatattgtaacaaatacacgtggcagtgacacattactgaagatatcagctaccttgtaagtaacatcaatgtccaaaaataatattaaaataga |
33357859 |
T |
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| Q |
514 |
agca |
517 |
Q |
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| T |
33357860 |
agca |
33357863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 729
Target Start/End: Original strand, 33357947 - 33358065
Alignment:
| Q |
610 |
tatatatattttagaggtgttgga----ttgtagagataaaatacttataatgtgctaacttttcaaccactcatgcaaacaaaaccaaatatgttaatt |
705 |
Q |
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| T |
33357947 |
tatatatattttagaggtgttggatggattgtagagataaaatacttataatgtgcaaac----aaaatac-aagggtaataaaaccaaatatgttaatt |
33358041 |
T |
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| Q |
706 |
gttaggttaatattttatctctta |
729 |
Q |
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| T |
33358042 |
gttaggttaatattttctctctta |
33358065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 720 - 751
Target Start/End: Original strand, 42056028 - 42056059
Alignment:
| Q |
720 |
ttatctcttactccctccgtcccaaattgtat |
751 |
Q |
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| T |
42056028 |
ttatctcttactccctccgtcccaaattgtat |
42056059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0939 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0939
Description:
Target: scaffold0939; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 714 - 751
Target Start/End: Complemental strand, 931 - 894
Alignment:
| Q |
714 |
aatattttatctcttactccctccgtcccaaattgtat |
751 |
Q |
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| T |
931 |
aatattttatattttactccctccgtcccaaattgtat |
894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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