View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_low_22 (Length: 275)

Name: NF2975_low_22
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_low_22
NF2975_low_22
[»] chr3 (2 HSPs)
chr3 (130-275)||(32581422-32581568)
chr3 (26-82)||(2238033-2238089)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 32581422 - 32581568
Alignment:
Q  130 cttttccatcattgttccgagaaccttcgacaaactaaatatgttgcgtgaacaattgtctccaatgtgattaacctaaatttgtcact-atagctatca 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  32581422 cttttccatcattgttccgagaaccttcgacaaactaaatatgttgcgtgaacaattgcctccaatgtgattaacctagatttgtcactgatagctatca 32581521  T
Q  229 tgatgcttaatatcgatggtagcactcaaattaatacagttaatcat 275  Q
    |||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  32581522 tgatgcttaatatccatggtagtactcaaattaatatagttaatcat 32581568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 2238089 - 2238033
Alignment:
Q  26 accaccacctctccactataacccaccatcaccatcgtcctcctcaccaccatcctt 82  Q
    ||||||||||| ||||  |||||||||||||||||||||||||||||| ||| ||||    
T  2238089 accaccacctcaccaccgtaacccaccatcaccatcgtcctcctcaccgccaccctt 2238033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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