View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_low_28 (Length: 250)

Name: NF2975_low_28
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_low_28
NF2975_low_28
[»] chr1 (9 HSPs)
chr1 (1-240)||(30710346-30710585)
chr1 (25-240)||(30689601-30689816)
chr1 (25-239)||(30718644-30718858)
chr1 (12-240)||(30698474-30698702)
chr1 (25-233)||(30656545-30656753)
chr1 (26-239)||(30671707-30671920)
chr1 (137-216)||(16252065-16252144)
chr1 (137-215)||(33042601-33042679)
chr1 (205-240)||(15815181-15815216)
[»] chr4 (1 HSPs)
chr4 (53-233)||(56539165-56539345)
[»] chr2 (1 HSPs)
chr2 (161-205)||(38337630-38337674)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30710346 - 30710585
Alignment:
Q  1 gatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30710346 gatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctcttgcaaagattctt 30710445  T
Q  101 tgacgctttcgaaagaaaaattgaggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgt 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30710446 tgacgctttcgaaagaaaaattgaggaaagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgt 30710545  T
Q  201 tcctagccaaacccttcttcctcctcttgttgtatctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30710546 tcctagccaaacccttcttcctcctcttgttgtatctctg 30710585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 30689601 - 30689816
Alignment:
Q  25 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattga 124  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||  | |||||||||||    
T  30689601 tagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattga 30689700  T
Q  125 ggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcc 224  Q
    | | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30689701 gcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcc 30689800  T
Q  225 tcttgttgtatctctg 240  Q
    ||||||||| ||||||    
T  30689801 tcttgttgtgtctctg 30689816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 30718644 - 30718858
Alignment:
Q  25 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattga 124  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||  | |||||||||||    
T  30718644 tagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttgaccctttgaacagaaaaattga 30718743  T
Q  125 ggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcc 224  Q
    | | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30718744 gcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcc 30718843  T
Q  225 tcttgttgtatctct 239  Q
    |||||||||||||||    
T  30718844 tcttgttgtatctct 30718858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 30698474 - 30698702
Alignment:
Q  12 ttttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcg 111  Q
    ||||||||| |  ||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||      
T  30698474 ttttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttga 30698573  T
Q  112 aaagaaaaattgaggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaa 211  Q
    | |||||||||||| | |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30698574 acagaaaaattgagcacagcattattacctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaa 30698673  T
Q  212 cccttcttcctcctcttgttgtatctctg 240  Q
    | |||||||||||||||||||||||||||    
T  30698674 ctcttcttcctcctcttgttgtatctctg 30698702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 30656545 - 30656753
Alignment:
Q  25 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattga 124  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||  | |||||||||||    
T  30656545 tagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattga 30656644  T
Q  125 ggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcc 224  Q
    | | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | || ||    
T  30656645 gcacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccacc 30656744  T
Q  225 tcttgttgt 233  Q
     ||||||||    
T  30656745 ccttgttgt 30656753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 30671707 - 30671920
Alignment:
Q  26 agtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattgag 125  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||  | ||||||||||||    
T  30671707 agtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgag 30671806  T
Q  126 gaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcct 225  Q
     |  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| | || ||     
T  30671807 cacggcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccc 30671906  T
Q  226 cttgttgtatctct 239  Q
    |||||||| |||||    
T  30671907 cttgttgtgtctct 30671920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 16252065 - 16252144
Alignment:
Q  137 aacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaaccctt 216  Q
    ||||||||||| |||| |||||||||||||||||||  || ||  |||||||||||| ||||||||||| ||| ||||||    
T  16252065 aacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt 16252144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 33042679 - 33042601
Alignment:
Q  137 aacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaaccct 215  Q
    ||||||||||  |||| || |||||||||||||| ||||||||| |||| ||||||| ||| ||||||||||| |||||    
T  33042679 aacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 33042601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 15815216 - 15815181
Alignment:
Q  205 agccaaacccttcttcctcctcttgttgtatctctg 240  Q
    ||||||||||||||||||||||||| ||||||||||    
T  15815216 agccaaacccttcttcctcctcttgctgtatctctg 15815181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 56539345 - 56539165
Alignment:
Q  53 gtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattgaggaaagcattataacctctcattaaaaa 152  Q
    ||||| || ||| |||||||||||||||||||||| ||||| || ||||||| ||||  | |||||||||||| | | |||||| |||||||| | ||||    
T  56539345 gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaa 56539246  T
Q  153 tgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcctcttgttgt 233  Q
    |||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||| |||||||||  |||||||||    
T  56539245 tgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt 56539165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 38337674 - 38337630
Alignment:
Q  161 gatcataagctaaagcagcatcttcagcactattaaatgttccta 205  Q
    ||||||| ||||||||||||||||| ||| ||| |||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttccta 38337630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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