View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_low_3 (Length: 617)

Name: NF2975_low_3
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_low_3
NF2975_low_3
[»] chr2 (17 HSPs)
chr2 (290-604)||(28215611-28215925)
chr2 (293-517)||(32565382-32565609)
chr2 (293-517)||(32806567-32806794)
chr2 (293-517)||(32815004-32815231)
chr2 (293-517)||(32309226-32309453)
chr2 (16-171)||(28215380-28215532)
chr2 (290-456)||(28220447-28220610)
chr2 (320-517)||(32799640-32799840)
chr2 (435-567)||(28220224-28220356)
chr2 (50-168)||(28220694-28220809)
chr2 (531-604)||(32309094-32309167)
chr2 (531-604)||(32565668-32565741)
chr2 (531-604)||(32799899-32799972)
chr2 (531-604)||(32806853-32806926)
chr2 (531-604)||(32815290-32815363)
chr2 (293-334)||(32305344-32305385)
chr2 (16-53)||(28220830-28220867)
[»] chr6 (2 HSPs)
chr6 (296-532)||(301362-301596)
chr6 (531-603)||(301249-301321)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 290 - 604
Target Start/End: Original strand, 28215611 - 28215925
Alignment:
Q  290 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28215611 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatat 28215710  T
Q  390 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaactt 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215711 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaactt 28215810  T
Q  490 gactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttg 589  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215811 cactgaacgaaaagaagtatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttg 28215910  T
Q  590 aagatgaagaatctc 604  Q
    |||||||||||||||    
T  28215911 aagatgaagaatctc 28215925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 293 - 517
Target Start/End: Original strand, 32565382 - 32565609
Alignment:
Q  293 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32565382 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32565481  T
Q  393 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 489  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32565482 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32565581  T
Q  490 gactgaacgaaaagaagtatgatagaaa 517  Q
    |||||||||||||||||||||| |||||    
T  32565582 gactgaacgaaaagaagtatgagagaaa 32565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 293 - 517
Target Start/End: Original strand, 32806567 - 32806794
Alignment:
Q  293 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32806567 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32806666  T
Q  393 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 489  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32806667 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32806766  T
Q  490 gactgaacgaaaagaagtatgatagaaa 517  Q
    |||||||||||||||||||||| |||||    
T  32806767 gactgaacgaaaagaagtatgagagaaa 32806794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 293 - 517
Target Start/End: Original strand, 32815004 - 32815231
Alignment:
Q  293 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 392  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  |    
T  32815004 acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatctt 32815103  T
Q  393 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 489  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32815104 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32815203  T
Q  490 gactgaacgaaaagaagtatgatagaaa 517  Q
    |||||||||||||||||||||| |||||    
T  32815204 gactgaacgaaaagaagtatgagagaaa 32815231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 293 - 517
Target Start/End: Complemental strand, 32309453 - 32309226
Alignment:
Q  293 acctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattct 392  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||  |    
T  32309453 acctggatgaagcaatcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatctt 32309354  T
Q  393 cagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaactt 489  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |    
T  32309353 cagcttgagggcaagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaat 32309254  T
Q  490 gactgaacgaaaagaagtatgatagaaa 517  Q
    |||||||||||||||||||||| |||||    
T  32309253 gactgaacgaaaagaagtatgagagaaa 32309226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 28215380 - 28215532
Alignment:
Q  16 caacaacaaggaagcatcacaaccctgattcagcaacagaaaatcaataccattattaaagcaagaagataatttagcaaagaaaaccaacaagaaatag 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28215380 caacaacaaggatgcatcacaaccctgattcagcaacagaaaatcaataccattatcaaagcaagaagataatttagcaaagaaaaccaacaagaaatag 28215479  T
Q  116 aacacaaaaaatttaggatatctattagtattcactactatttcataaccaatcaa 171  Q
    ||||||||||||||||||||| |||| ||||||   ||||||||||||||||||||    
T  28215480 aacacaaaaaatttaggatatttattggtattc---actatttcataaccaatcaa 28215532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 290 - 456
Target Start/End: Complemental strand, 28220610 - 28220447
Alignment:
Q  290 ggaacctggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatat 389  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||    
T  28220610 ggaacctggatgaagcaatcatgaaa--agagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatat 28220514  T
Q  390 tctcagcttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttc 456  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||    
T  28220513 tctcagcttgagggcaagaaaccttatagaaattatattgaagattggaaccatctctgattctttc 28220447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 320 - 517
Target Start/End: Original strand, 32799640 - 32799840
Alignment:
Q  320 agacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaagaatccttataga 419  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||    
T  32799640 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga 32799739  T
Q  420 aattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaagaagtatgatagaa 516  Q
    |||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  ||||||||||||||||||||||| ||||    
T  32799740 aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaa 32799839  T
Q  517 a 517  Q
    |    
T  32799840 a 32799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 435 - 567
Target Start/End: Complemental strand, 28220356 - 28220224
Alignment:
Q  435 tggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 534  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28220356 tggaaccatctctgattctttgattgaaatcaaacggaaaaataccagctaacttcactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 28220257  T
Q  535 gagagagagaagaacaggaaggactgcaatgaa 567  Q
    ||||||||||||||||| |||||||||||||||    
T  28220256 gagagagagaagaacagaaaggactgcaatgaa 28220224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 28220809 - 28220694
Alignment:
Q  50 aacagaaaatcaataccattattaaagcaagaagataatttagcaaagaaaaccaacaagaaatagaacacaaaaaatttaggatatctattagtattca 149  Q
    |||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||     
T  28220809 aacagaaaatgaataccaatatcaaagcaagaaaataatttagcaaagaaaaccaacaagaatcagaacacaaaaaatttaggatatctattagtattc- 28220711  T
Q  150 ctactatttcataaccaat 168  Q
      |||||||||||||||||    
T  28220710 --actatttcataaccaat 28220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 604
Target Start/End: Complemental strand, 32309167 - 32309094
Alignment:
Q  531 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctc 604  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||    
T  32309167 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctc 32309094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 604
Target Start/End: Original strand, 32565668 - 32565741
Alignment:
Q  531 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctc 604  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||    
T  32565668 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctc 32565741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 604
Target Start/End: Original strand, 32799899 - 32799972
Alignment:
Q  531 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctc 604  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||||||    
T  32799899 ttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatgaagaatctc 32799972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 604
Target Start/End: Original strand, 32806853 - 32806926
Alignment:
Q  531 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctc 604  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||    
T  32806853 ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctc 32806926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 604
Target Start/End: Original strand, 32815290 - 32815363
Alignment:
Q  531 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctc 604  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||    
T  32815290 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctc 32815363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 32305385 - 32305344
Alignment:
Q  293 acctggatgaagcaatcatgaaagaagagacgaagaagagaa 334  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32305385 acctggatgaagcaatcatgaaagaagagacgaagaagagaa 32305344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 28220867 - 28220830
Alignment:
Q  16 caacaacaaggaagcatcacaaccctgattcagcaaca 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28220867 caacaacaaggaagcatcacaaccctgattcagcaaca 28220830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 296 - 532
Target Start/End: Complemental strand, 301596 - 301362
Alignment:
Q  296 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcag 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||||||||  ||||    
T  301596 tggatgaagcaatcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcag 301497  T
Q  396 cttcagggcaagaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactga 495  Q
    ||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||   |||||| |||||||    
T  301496 cttgagggctagaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctaacgtgactga 301397  T
Q  496 acgaaaagaagtatgatagaaattaaatgaagttgtt 532  Q
    || |||||  |||||| |||||  | |||||||||||    
T  301396 accaaaag--gtatgagagaaagaagatgaagttgtt 301362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 531 - 603
Target Start/End: Complemental strand, 301321 - 301249
Alignment:
Q  531 ttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatct 603  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||| || ||||| ||||||||||||||||||    
T  301321 ttctgaaagagagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatct 301249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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