View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_31 (Length: 249)
Name: NF2975_low_31
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 13850305 - 13850073
Alignment:
| Q |
1 |
ttacttttggtgctttgcaggagcttgttaattcattggaaaagaaaactaaactggagcttcctgataatgttacagacaacgaactgattaataaact |
100 |
Q |
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| T |
13850305 |
ttacttttggtgatttgcaggagcttgttaattcattggaaaagaaaactaaactggagcttcctgataatgttacagacaacgaactgattaataaact |
13850206 |
T |
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| Q |
101 |
tgccgaagaaaatgaaaaactcaaggtaaacaatacatagaaaatgtttgtaaaacttatcatttatgaaatgatgtgtgttaatagtatacgaaatcat |
200 |
Q |
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| T |
13850205 |
tgccgaagaaaatgaaaaactcaaggtaaacaatacatagaaaatgtttgtaaaacttatcatttatgaaatgatgtgtgttaatagtatatgaaatcat |
13850106 |
T |
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| Q |
201 |
tgttacttttggtgcttacaggagcttgttagt |
233 |
Q |
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| T |
13850105 |
tgttacttttggtgcttacaggagcttgttagt |
13850073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 13850103 - 13849993
Alignment:
| Q |
1 |
ttacttttggtgctttgcaggagcttgttaattcattggaaaagaaaactaaactggagcttcctgataatgttacagacaacgaactgattaataaact |
100 |
Q |
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| T |
13850103 |
ttacttttggtgctta-caggagcttgttagttcattggaaaagaaaactaaactggagcttcctgctaattttactgaaaatgaagtgattaataagct |
13850005 |
T |
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| Q |
101 |
tgccgaagaaaa |
112 |
Q |
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| T |
13850004 |
tacggaagaaaa |
13849993 |
T |
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