View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_low_32 (Length: 249)

Name: NF2975_low_32
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_low_32
NF2975_low_32
[»] chr2 (3 HSPs)
chr2 (1-244)||(38895739-38895983)
chr2 (174-223)||(5435487-5435536)
chr2 (118-244)||(42898298-42898424)
[»] chr4 (2 HSPs)
chr4 (117-244)||(30518147-30518274)
chr4 (133-244)||(22085521-22085632)
[»] chr5 (1 HSPs)
chr5 (174-245)||(1983175-1983246)
[»] chr1 (8 HSPs)
chr1 (133-244)||(42287117-42287228)
chr1 (136-244)||(31644076-31644184)
chr1 (118-244)||(12804511-12804637)
chr1 (118-244)||(28496106-28496232)
chr1 (117-244)||(50788818-50788945)
chr1 (118-244)||(36989340-36989466)
chr1 (117-206)||(12774975-12775064)
chr1 (116-244)||(4160377-4160505)
[»] chr7 (2 HSPs)
chr7 (118-244)||(44150800-44150926)
chr7 (117-206)||(40749428-40749517)
[»] chr8 (2 HSPs)
chr8 (117-244)||(5788722-5788849)
chr8 (136-244)||(33186735-33186843)
[»] chr3 (2 HSPs)
chr3 (174-222)||(12106124-12106172)
chr3 (174-222)||(46987775-46987823)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38895739 - 38895983
Alignment:
Q  1 aatcaaacttgcttctttcaagttctttttagggctgcactaatcta-gacaagatacaactttgacataaannnnnnnagtatgacatatctaagaatt 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||||    
T  38895739 aatcaaacttgcttctttcaagttctttttagtgctgcactaatctaagacaagttacaactttgacataaatttttttagtatgacatatctaagaatt 38895838  T
Q  100 aagaaaacataaattacttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaa 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38895839 aagaaaagataaattacttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaa 38895938  T
Q  200 cagcataaaattttgagcacttctcacatttccacttcttctcac 244  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  38895939 cagcataaaattttgagcacttctcacacttccacttcttctcac 38895983  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 5435487 - 5435536
Alignment:
Q  174 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttct 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5435487 tgagtgtgctttccaatccgattgaacaacataaaattttgagcacttct 5435536  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 42898424 - 42898298
Alignment:
Q  118 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 217  Q
    |||||||| ||||  || ||||| |||||| |||||||||| || ||||| || || ||||| |||||||| || |||||||| |||||    || ||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  218 acttctcacatttccacttcttctcac 244  Q
    |||| ||||||||||||||||||||||    
T  42898324 acttgtcacatttccacttcttctcac 42898298  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 30518147 - 30518274
Alignment:
Q  117 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 216  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||  |||||||    
T  30518147 ttaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgag 30518246  T
Q  217 cacttctcacatttccacttcttctcac 244  Q
    ||||||||||| ||||||||||| ||||    
T  30518247 cacttctcacacttccacttcttttcac 30518274  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 22085521 - 22085632
Alignment:
Q  133 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttcc 232  Q
    |||||||||||||||||||| |||||||| |||||| ||||    || ||||||||||| |||||||| |||||    || || ||||| ||||| ||||    
T  22085521 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 22085620  T
Q  233 acttcttctcac 244  Q
    ||||||||||||    
T  22085621 acttcttctcac 22085632  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 1983246 - 1983175
Alignment:
Q  174 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccacttcttctcact 245  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  1983246 tgagtgtgctttccaatccgattgaacaacataaaattttgagcacttctcacacttccacttcttctcact 1983175  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 42287228 - 42287117
Alignment:
Q  133 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttcc 232  Q
    ||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| || ||||||||||||||    |||||||| || ||||||||||    
T  42287228 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttcc 42287129  T
Q  233 acttcttctcac 244  Q
    ||||||||||||    
T  42287128 acttcttctcac 42287117  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 31644076 - 31644184
Alignment:
Q  136 ccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccact 235  Q
    |||||||||||||| ||||||| ||||||||| || || ||||| ||||||||||| || ||||||||||| |  ||||||||||| ||||||||||| |    
T  31644076 ccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatttccatt 31644175  T
Q  236 tcttctcac 244  Q
    | |||||||    
T  31644176 ttttctcac 31644184  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  118 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 217  Q
    |||||||| |||| ||||||||| |||||| | || || ||||||||||||||||| || || ||||||||||| ||||||||||||||    || || |    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  218 acttctcacatttccacttcttctcac 244  Q
    |||| |||||||||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 28496106 - 28496232
Alignment:
Q  118 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 217  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  218 acttctcacatttccacttcttctcac 244  Q
    | || ||||||||||||||||||||||    
T  28496206 atttttcacatttccacttcttctcac 28496232  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 50788818 - 50788945
Alignment:
Q  117 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 216  Q
    |||||| || |||| ||||||||| |||||  | |||||||| || ||||||||||| || ||||| |||||||| ||||||||||||||    || |||    
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  217 cacttctcacatttccacttcttctcac 244  Q
    ||||| ||||| ||||| ||||||||||    
T  50788918 cacttatcacacttccatttcttctcac 50788945  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 36989466 - 36989340
Alignment:
Q  118 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 217  Q
    ||||| |||||||| || ||||| |||||||||||||| || ||||||||  | || || || ||||||||||| ||||||||||||||    || || |    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  218 acttctcacatttccacttcttctcac 244  Q
    |||| |||||||||||||| |||||||    
T  36989366 acttatcacatttccactttttctcac 36989340  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 12775064 - 12774975
Alignment:
Q  117 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcata 206  Q
    |||||| || |||| ||||||||| |||||| | || ||  ||||||||||||| || || || ||||||||||| ||||||||||||||    
T  12775064 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcata 12774975  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 244
Target Start/End: Complemental strand, 4160505 - 4160377
Alignment:
Q  116 cttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttga 215  Q
    |||||||||| ||||  || ||||| ||||| || || ||| |||| |||||| | || || || |||||||||||||| ||||| |||||   ||| ||    
T  4160505 cttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttaga 4160406  T
Q  216 gcacttctcacatttccacttcttctcac 244  Q
     || |||||||| ||||||||||||||||    
T  4160405 acatttctcacacttccacttcttctcac 4160377  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 44150800 - 44150926
Alignment:
Q  118 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 217  Q
    ||||| ||||| || || |||||||||||||||||||| |||||||||||||| ||   ||| || |||||||| ||||||||||||||   ||| ||||    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  218 acttctcacatttccacttcttctcac 244  Q
    |||| ||||||||||| ||||||||||    
T  44150900 acttgtcacatttccatttcttctcac 44150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 40749517 - 40749428
Alignment:
Q  117 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcata 206  Q
    ||||||||| ||||  || ||||||||||| || |||||||||||||||||||| || | ||| ||||||||||| ||||| || |||||    
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcata 40749428  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 5788722 - 5788849
Alignment:
Q  117 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 216  Q
    ||||||||| ||||  || ||||| |||||| | ||||||||||| |||||||| || || || ||||||||||| ||||||||||||||    |||||     
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  217 cacttctcacatttccacttcttctcac 244  Q
    ||||| ||||||||||||||||||||||    
T  5788822 cacttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 244
Target Start/End: Complemental strand, 33186843 - 33186735
Alignment:
Q  136 ccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacatttccact 235  Q
    |||||||||||||| || ||||||| |||||||   || ||||| ||||||||||| ||||||||||||||    || || || ||||||||||||||||    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  236 tcttctcac 244  Q
    | |||||||    
T  33186743 ttttctcac 33186735  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 12106172 - 12106124
Alignment:
Q  174 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12106172 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 12106124  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 46987775 - 46987823
Alignment:
Q  174 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46987775 tgagtgtgctttccaatccgattgaacagcataaaattttgagcacttc 46987823  T

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