View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_35 (Length: 237)
Name: NF2975_low_35
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22933073 - 22932853
Alignment:
| Q |
1 |
ttgcttgaatcatttgttaatcttattattccatttttctctatctttgcaacaccatttaaggttaaattgttggcaccaccatccttaaaacctgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22933073 |
ttgcttgaatcatttgttaatcttattattccatttttctctatctttgcaacaccgtttaaggttaaattgctggcaccaccatccttaaaacctgtgt |
22932974 |
T |
|
| Q |
101 |
atagtagttggtcaacttgggacaatacttgaacaaaaaggaatggcaaaaatgttaccaagaattgaagatgggttggcatgatgaacaagagaaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22932973 |
atagtagttggtcaacttgggacaatacttgaacaaaaaggaatggcaaaaatgttaccaagaattgaagatgggttggcatgatgaacaagagaaatca |
22932874 |
T |
|
| Q |
201 |
gctaaggtaagggcttgagat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
22932873 |
gctaaggtaagggcttgagat |
22932853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 22922524 - 22922653
Alignment:
| Q |
10 |
tcatttgttaatcttattattccatttttctctatctttgcaacaccatttaaggttaaattgttggcaccaccatccttaaaacctgtgtatagtagtt |
109 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||| ||| | |||||||||||||| || || | |||| ||||||||||||||||||||||||||| |
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| T |
22922524 |
tcatttgttaatcttattataccatttttttctatctctgctataccatttaaggttaggttttttggaccaacatccttaaaacctgtgtatagtagtt |
22922623 |
T |
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| Q |
110 |
ggtcaacttgggacaatacttgaacaaaaa |
139 |
Q |
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| T |
22922624 |
ggtcaacttgagacaaaactggtacaaaaa |
22922653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 15628610 - 15628687
Alignment:
| Q |
12 |
atttgttaatcttattattccatttttctctatctttgcaacaccatttaaggttaaattgttggcaccaccatcctt |
89 |
Q |
| |
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| T |
15628610 |
atttgttaatcttatcatcccatttttctctatctctgcaaaaccattcaaggtaagattgttgggaccaacatcctt |
15628687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 15628760 - 15628808
Alignment:
| Q |
159 |
caagaattgaagatgggttggcatgatgaacaagagaaatcagctaagg |
207 |
Q |
| |
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||||||||||| | |||||||||||||||| ||||||| |||||||||| |
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| T |
15628760 |
caagaattgaacaagggttggcatgatgaataagagaattcagctaagg |
15628808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 24382696 - 24382732
Alignment:
| Q |
10 |
tcatttgttaatcttattattccatttttctctatct |
46 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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|
| T |
24382696 |
tcatttgttaatcttattataccatttttctctatct |
24382732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 36386083 - 36386047
Alignment:
| Q |
10 |
tcatttgttaatcttattattccatttttctctatct |
46 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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|
| T |
36386083 |
tcatttgttaatcttattataccatttttctctatct |
36386047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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