View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_36 (Length: 230)
Name: NF2975_low_36
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 7027558 - 7027363
Alignment:
| Q |
1 |
cctcttccagcagcccttctgtttgtgcgattcatactccggcgattttcgttaactccttcatcgtgtgaggtagctcgtgtcttttccttatatttcc |
100 |
Q |
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| T |
7027558 |
cctcttccagcagcccttctgtttgtgcgattcatactccggcgagtttcgttaactccttcatcgtgtgaggtagctcgtgtcttttccttatatttcc |
7027459 |
T |
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| Q |
101 |
gcttctgcttataacttctaattgcttatagcttttaattgtttataacttctgatttgcttatatgttttaattgtttatagcttctgcttatag |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7027458 |
gcttctgcttataacttctaattgcttatagcttttaattgtttataacttctgatttgcttatatgttttaattgtttatagcttctgcttatag |
7027363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 7014041 - 7013936
Alignment:
| Q |
1 |
cctcttccagcagcccttctgtttgtgcgattcatactccggcgattttcgttaactccttcatcgtgtgaggtagctcgtgtcttttccttatatttcc |
100 |
Q |
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|||| ||| |||||| |||| |||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||| | |
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| T |
7014041 |
cctcctccggcagccattctctttgtgcgatctatactccggcgagtttctttaaccccttcatcgtgtgaggtagctcgtgtcttttccttaaattttc |
7013942 |
T |
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| Q |
101 |
gcttct |
106 |
Q |
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|||||| |
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| T |
7013941 |
gcttct |
7013936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 7013853 - 7013757
Alignment:
| Q |
122 |
ttgcttatagcttttaattgtttataacttctgatt-tgcttata---------tgttttaattgtttatagcttctgcttatagcttttgtttctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||| |||||||||||| |
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| T |
7013853 |
ttgcttatagcttttaattgtttataacttctgattctgcttataggttttgcttattttaattgtttgtagcttctgcttataacttttgtttctg |
7013757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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