View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_39 (Length: 227)
Name: NF2975_low_39
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_39 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 3332597 - 3332377
Alignment:
| Q |
7 |
caacaaaccacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgagaagaaaacagcaacaacaagttcagcacag |
106 |
Q |
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| T |
3332597 |
caacaaaccacagatcaagatgaacaaagcggaagtagcagcggcggtggactcaacctcacaaaccgagaagaaaacagcaacaacaagttcagcacag |
3332498 |
T |
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| Q |
107 |
attttagccccaagttagaatccggaggaggtggttccggtggcgacaccgattcaatgacaagaagaccaagaggaagaccagctggatccaaaaacaa |
206 |
Q |
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| T |
3332497 |
attttagccccaagttagaatccggaggaggtggttccggtggcgacaccgattcaatgacaagaagaccaagaggaagaccagctggatccaaaaacaa |
3332398 |
T |
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| Q |
207 |
accaaaaccaccgattatcat |
227 |
Q |
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| T |
3332397 |
accaaaaccaccgattatcat |
3332377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 32803278 - 32803230
Alignment:
| Q |
170 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
218 |
Q |
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| T |
32803278 |
gaagaccaagaggaagaccacctggatccaaaaacagaccaaaaccacc |
32803230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 16578617 - 16578665
Alignment:
| Q |
170 |
gaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccacc |
218 |
Q |
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| T |
16578617 |
gaagaccaagaggaagaccacccggttcaaaaaacaaaccaaaaccacc |
16578665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 32809738 - 32809703
Alignment:
| Q |
170 |
gaagaccaagaggaagaccagctggatccaaaaaca |
205 |
Q |
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| T |
32809738 |
gaagaccaagaggaagaccacctggatccaaaaaca |
32809703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 13212894 - 13212835
Alignment:
| Q |
168 |
aagaagaccaagaggaagaccagctggatccaaaaacaaaccaaaaccaccgattatcat |
227 |
Q |
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|||||||||||||||||||||||| || || |||||||||||||||||||| || ||||| |
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| T |
13212894 |
aagaagaccaagaggaagaccagcaggttcgaaaaacaaaccaaaaccacctatcatcat |
13212835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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