View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_41 (Length: 222)
Name: NF2975_low_41
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_41 |
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| [»] scaffold0530 (1 HSPs) |
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| [»] scaffold0146 (3 HSPs) |
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Alignment Details
Target: scaffold0530 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 8845 - 8950
Alignment:
| Q |
1 |
catggatcataacatagcaggtgcattgaaattgaatttgttattctaatcaaaaaagaaattgaatttgttattattttgacttggtgtcaacaagaca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8845 |
catgaatcataacatagcaggtgcattgaaattgaatttgttattgtaatcaaaaaagaaattgaatttgttattattttgacttggtgtcaacaagata |
8944 |
T |
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| Q |
101 |
tgactc |
106 |
Q |
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|||||| |
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| T |
8945 |
tgactc |
8950 |
T |
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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 4566417 - 4566361
Alignment:
| Q |
106 |
catattcaagagctgattttcacgaccaacatgttttaagcatttcaactaatttcg |
162 |
Q |
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| T |
4566417 |
catattcaagagctgatttttacgaccaacatgttttaagcatttcaactaatttcg |
4566361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 9032 - 8979
Alignment:
| Q |
106 |
catattcaagagctgattttcacgaccaacatgttttaagcatttcaactaatt |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9032 |
catattcaagagctgattttcacgaccaacatgttttaagcgtttcaactaatt |
8979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 16699 - 16646
Alignment:
| Q |
106 |
catattcaagagctgattttcacgaccaacatgttttaagcatttcaactaatt |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16699 |
catattcaagagctgattttcacgaccaacatgttttaagcgtttcaactaatt |
16646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 6055 - 6002
Alignment:
| Q |
106 |
catattcaagagctgattttcacgaccaacatgttttaagcatttcaactaatt |
159 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6055 |
catattcaagagctaattttcacgaccaacatgttttaagtgtttcaactaatt |
6002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 17237498 - 17237551
Alignment:
| Q |
106 |
catattcaagagctgattttcacgaccaacatgttttaagcatttcaactaatt |
159 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
17237498 |
catattcaagagctgattttcacgaccaacatgttttaagcgtttcaactaatt |
17237551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 11893682 - 11893717
Alignment:
| Q |
175 |
tgagtgcaatgagttctgagttcgttttctctgctc |
210 |
Q |
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| T |
11893682 |
tgagtgcaatgagttctgagttcgttttctctgctc |
11893717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 18552723 - 18552671
Alignment:
| Q |
110 |
ttcaagagctgattttcacgaccaacatgttttaagcatttcaactaatttcg |
162 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18552723 |
ttcaagagctgattttcacgaccaacatgttttaaacatttcaactaatttcg |
18552671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 20281385 - 20281418
Alignment:
| Q |
177 |
agtgcaatgagttctgagttcgttttctctgctc |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
20281385 |
agtgcaatgagttctgagttcgttttctctgctc |
20281418 |
T |
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