View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_42 (Length: 219)
Name: NF2975_low_42
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_42 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 26783989 - 26784193
Alignment:
| Q |
15 |
agagatgaaaagttaagtaaaaaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaa |
114 |
Q |
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| T |
26783989 |
agagatgaaaagttaagtaaaaaagaccttggtgctgcaaccgcgtttaggagggtgatgatggtagggatataaacagttccccatttagggaccacaa |
26784088 |
T |
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| Q |
115 |
tctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccat |
214 |
Q |
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| T |
26784089 |
tctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtgaaccacaatcttccggacaaagaaaaaactgtaaaccat |
26784188 |
T |
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| Q |
215 |
atatg |
219 |
Q |
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||||| |
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| T |
26784189 |
atatg |
26784193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 26817072 - 26817270
Alignment:
| Q |
21 |
gaaaagttaagtaaa-aaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatctca |
119 |
Q |
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| T |
26817072 |
gaaaagttgagtaaataaagaccttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctca |
26817171 |
T |
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| Q |
120 |
ggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatatat |
218 |
Q |
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| T |
26817172 |
ggcaccataacagttgcaggtaacagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatat |
26817270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 26830728 - 26830906
Alignment:
| Q |
33 |
aaaaaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatctcaggcaccataacag |
132 |
Q |
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| T |
26830728 |
aaaaaataccttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacag |
26830827 |
T |
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| Q |
133 |
ttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaac |
211 |
Q |
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| T |
26830828 |
ttgcaggtaacacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaac |
26830906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 26790360 - 26790558
Alignment:
| Q |
19 |
atgaaaagttaagtaaa-aaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatct |
117 |
Q |
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| T |
26790360 |
atgaaaagttgagtaaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttagggaccacaacct |
26790459 |
T |
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| Q |
118 |
caggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatat |
216 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||| || | |||||||||||||||||| |||| |
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| T |
26790460 |
caggaaccataacagttgcaggtaacaatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaaaaaactgtaaacaatat |
26790558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 41920554 - 41920460
Alignment:
| Q |
69 |
gtgataatggaagggatataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaa |
163 |
Q |
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| T |
41920554 |
gtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaa |
41920460 |
T |
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