View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_5 (Length: 511)
Name: NF2975_low_5
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 21 - 491
Target Start/End: Complemental strand, 11119678 - 11119203
Alignment:
| Q |
21 |
tggatgcaagaggatgattatctaataatggggaatgttgnnnnnnncacagacataacttgtgacggaaagagaggatatactataat-----gaaaat |
115 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11119678 |
tggatgcaagaggatgatcatctaataatgggaaatgttgaaaaaaacaaagacataacttgtgacggaaagagaggatatactataatataatgaaaat |
11119579 |
T |
|
| Q |
116 |
tacttagnnnnnnnnnnggttatcttgcacacataaagcacataacatacacatcaaggcacagatgtgcctagctagcacttttctttattagtgaatt |
215 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119578 |
tacttagaaaaaaaaaagattatcttgcacacataaagcacataacatacacatcaaggcacagatgtgcctagctagcacttttctttattagtgaatt |
11119479 |
T |
|
| Q |
216 |
ccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaaccatatccccctccattgattctgaggccacactagcaagatcc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11119478 |
ccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaaccatatccccctccattgattctgaggtcacactagcaagatcc |
11119379 |
T |
|
| Q |
316 |
aattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaattta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119378 |
aattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaattta |
11119279 |
T |
|
| Q |
416 |
taaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttga |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11119278 |
taaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttga |
11119203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 175 - 491
Target Start/End: Complemental strand, 11111747 - 11111432
Alignment:
| Q |
175 |
cacagatgtgcctagctagcacttttctttattagtgaattccaatcaccacatgcatttcaactaaagtaacccacattcatttagattgaactaacca |
274 |
Q |
| |
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|||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11111747 |
cacaaatgtgcttagccagcacttctctttattagtgaattccaatcaccacat----ttcatctaaagtaacccacattcatttagattgaactaacca |
11111652 |
T |
|
| Q |
275 |
tatccccctccattgattctg---aggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctt |
371 |
Q |
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||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
11111651 |
tatccccttccattgattctgcagaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctt |
11111552 |
T |
|
| Q |
372 |
tccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatg |
471 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||| |
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| T |
11111551 |
tccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatg |
11111452 |
T |
|
| Q |
472 |
gtatctgcacccggtgttga |
491 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11111451 |
gtatctgcacccggtgttga |
11111432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 253 - 480
Target Start/End: Original strand, 10793121 - 10793351
Alignment:
| Q |
253 |
ttcatttagattgaactaaccatatccccctccattgattctgagg---ccacactagcaagatccaattcagaagatttcttgttaacaaaattgcact |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||| || | |||||||| || ||| | |||||||| || ||||||||||| ||||||||||||||||| | |
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| T |
10793121 |
ttcatttaaattgaactaaccatatccccatcaaatgattctgtggagaccagagcggcaagatctaactcagaagattttttgttaacaaaattgcatt |
10793220 |
T |
|
| Q |
350 |
gctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttcc |
449 |
Q |
| |
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| || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| |||||| || ||||||| || | |
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| T |
10793221 |
gtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttattggc |
10793320 |
T |
|
| Q |
450 |
aaagttgttgacaatgctaatggtatctgca |
480 |
Q |
| |
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|||||| || ||||||||| ||||||||||| |
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| T |
10793321 |
aaagttattaacaatgctagtggtatctgca |
10793351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 491
Target Start/End: Complemental strand, 11156842 - 11156684
Alignment:
| Q |
333 |
gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
432 |
Q |
| |
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||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
433 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttga |
491 |
Q |
| |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttga |
11156684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 11137899 - 11137826
Alignment:
| Q |
334 |
ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcat |
407 |
Q |
| |
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|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcat |
11137826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 491
Target Start/End: Complemental strand, 11146089 - 11146047
Alignment:
| Q |
449 |
caaagttgttgacaatgctaatggtatctgcacccggtgttga |
491 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||| |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttga |
11146047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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