View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2975_low_8 (Length: 428)

Name: NF2975_low_8
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2975_low_8
NF2975_low_8
[»] chr4 (8 HSPs)
chr4 (29-394)||(15994109-15994470)
chr4 (247-333)||(42650809-42650895)
chr4 (354-394)||(49612770-49612810)
chr4 (275-329)||(52554820-52554874)
chr4 (250-330)||(11977012-11977093)
chr4 (354-387)||(55172883-55172916)
chr4 (287-335)||(7182354-7182402)
chr4 (287-335)||(50641927-50641975)
[»] chr1 (8 HSPs)
chr1 (248-333)||(50476706-50476791)
chr1 (248-333)||(39508946-39509031)
chr1 (248-333)||(49102793-49102878)
chr1 (248-333)||(51302993-51303078)
chr1 (287-333)||(47905852-47905898)
chr1 (354-394)||(5731163-5731203)
chr1 (251-335)||(7915741-7915825)
chr1 (261-333)||(38795156-38795228)
[»] scaffold0001 (1 HSPs)
scaffold0001 (122-224)||(67399-67501)
[»] chr8 (4 HSPs)
chr8 (248-330)||(43732936-43733017)
chr8 (354-387)||(28192609-28192642)
chr8 (38-102)||(4780332-4780396)
chr8 (354-394)||(33356317-33356357)
[»] scaffold0193 (1 HSPs)
scaffold0193 (127-234)||(24576-24683)
[»] chr7 (11 HSPs)
chr7 (248-335)||(42112774-42112861)
chr7 (129-223)||(6066579-6066673)
chr7 (19-102)||(36713731-36713814)
chr7 (354-385)||(40270075-40270106)
chr7 (248-302)||(23552355-23552409)
chr7 (287-335)||(3658674-3658722)
chr7 (354-394)||(5906345-5906385)
chr7 (287-335)||(5968205-5968253)
chr7 (287-335)||(7667328-7667376)
chr7 (354-394)||(38778086-38778126)
chr7 (354-394)||(40056275-40056315)
[»] chr6 (3 HSPs)
chr6 (130-222)||(10231394-10231486)
chr6 (264-329)||(24735076-24735141)
chr6 (287-335)||(34914497-34914545)
[»] chr2 (8 HSPs)
chr2 (248-335)||(16518906-16518992)
chr2 (248-333)||(15803350-15803435)
chr2 (288-335)||(26599071-26599118)
chr2 (288-333)||(10165287-10165332)
chr2 (264-336)||(8990778-8990850)
chr2 (38-102)||(18807100-18807164)
chr2 (354-386)||(23390162-23390194)
chr2 (354-390)||(26260684-26260720)
[»] chr3 (7 HSPs)
chr3 (273-333)||(54126463-54126523)
chr3 (248-335)||(40118717-40118803)
chr3 (264-333)||(30121340-30121409)
chr3 (354-387)||(45301081-45301114)
chr3 (250-335)||(52620651-52620736)
chr3 (261-333)||(44411972-44412044)
chr3 (354-394)||(45779041-45779081)
[»] scaffold0495 (1 HSPs)
scaffold0495 (130-193)||(8117-8180)
[»] chr5 (6 HSPs)
chr5 (264-335)||(38120011-38120082)
chr5 (248-298)||(15770239-15770288)
chr5 (354-387)||(10596364-10596397)
chr5 (171-220)||(32198485-32198534)
chr5 (354-387)||(38539859-38539892)
chr5 (122-223)||(42898691-42898789)
[»] scaffold0392 (1 HSPs)
scaffold0392 (354-387)||(12784-12817)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 394
Target Start/End: Original strand, 15994109 - 15994470
Alignment:
Q  29 aatatgactttttcgattttgagtatatggtttggagattgaaccctttgttatgttttcaaattgtaacataannnnnnnnnnnnnnnnggttactctg 128  Q
    |||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||                || |||||||    
T  15994109 aatatgactttttcgattttgattacatggtttggagattgagccttttgttatgttttcaaattgtaacataaatttttattttctttcggctactctg 15994208  T
Q  129 tagtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtactagatgggcttttgttggtttttaatatattcaccta 228  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  15994209 tagtagcttgactgtgttattgtaacatttgaactttttatttttctttggtacaccttgtactagatgcgcttttattggtttttaatatattcaccta 15994308  T
Q  229 gcttttnnnnnnnnnnnnttgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaa 328  Q
    ||||||            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||    
T  15994309 gctttttaaaaaaaaa--ttgtgaaagatttatcaatttctctatatatttctcaccctccaaaactttccttttccctcccctccaatctcccaaacaa 15994406  T
Q  329 agcctaatagtaacaatttagtatcttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  15994407 agcctaatagtaacaatttagtatc--ttatattttttgcgcttaaaaattcatatttaattcatg 15994470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 42650809 - 42650895
Alignment:
Q  247 ttgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||||||||| ||||||| ||  |||||||||||||| ||||| | || |||| || |||| ||||| ||| ||||||||||||    
T  42650809 ttgtgaaagatttatcaatttttccctatatttctcaccccccaaagcccttccttcccttcccctccaaactcacaaacaaagcct 42650895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 49612810 - 49612770
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  49612810 ttttatattttttgcggttaaaaattcatatttaattcatg 49612770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 52554874 - 52554820
Alignment:
Q  275 tatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaa 329  Q
    ||||||| ||||||||||||| |||||| ||||||| ||||| ||| ||||||||    
T  52554874 tatttctaaccctccaaaactttcccttcccctcccctccaaactctcaaacaaa 52554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 11977012 - 11977093
Alignment:
Q  250 tgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctt-tccctcccttccaatctcccaaacaaag 330  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||  |||| ||  ||||||| ||||| ||| |||||||||    
T  11977012 tgaaagatttctccatttccctatatatttctcaccccctaaaaacctccgttccccctcccctccaaactctcaaacaaag 11977093  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 55172916 - 55172883
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattta 387  Q
    |||||||||||||||| |||||||||||||||||    
T  55172916 ttttatattttttgcggttaaaaattcatattta 55172883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 7182354 - 7182402
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||| ||||| | ||||||| ||||| ||||||||||||||||||    
T  7182354 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcctaa 7182402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 50641975 - 50641927
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||||||||| | ||||||  ||||| ||||||||||||||||||    
T  50641975 tccaaaactctcccctcccctcctctccaaactcccaaacaaagcctaa 50641927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 50476706 - 50476791
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  || |||| ||||| ||||||||||||||||    
T  50476706 tgtgaaagatttctccatttctctatatatttctcaccctccaaaaccctccctacccttcccctccaaactcccaaacaaagcct 50476791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 39508946 - 39509031
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    |||||||||||| |  |||| |||||||||||| ||| | ||||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  39508946 tgtgaaagattttttcatttttctatatatttcccactcgccaaagctctcccttcccctcccctccaaactcccaaacaaagcct 39509031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 49102878 - 49102793
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    |||||||||||||||||||| ||  |||||||||| ||| ||||| | || |||| ||||||| ||||| ||||||||||||||||    
T  49102878 tgtgaaagatttctcaatttttccctatatttctctccccccaaagcccttccttcccctcccctccaaactcccaaacaaagcct 49102793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 51303078 - 51302993
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||||||||||| | ||   |||||||||| |||||||| || | ||||||| ||| ||| ||||| ||||||||||||||||    
T  51303078 tgtgaaagatttctctactttcgtatatatttcacaccctccgaatccctcccttccccacccctccaaactcccaaacaaagcct 51302993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 47905852 - 47905898
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    |||||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  47905852 tccaaaaccctccccttccctcccctccaaactcccaaacaaagcct 47905898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 5731203 - 5731163
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||| ||| ||||||||||||||||| ||||||    
T  5731203 ttttatatttttggcggttaaaaattcatatttaattcatg 5731163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 7915741 - 7915825
Alignment:
Q  251 gaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||||||||| || ||  ||||||||  |||| ||||| | ||||| | ||||||| ||||| |||| |||||||||||||    
T  7915741 gaaagatttctcaaattttccctatatttcctaccccccaaagccctcccctcccctcccgtccaaactccaaaacaaagcctaa 7915825  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 333
Target Start/End: Original strand, 38795156 - 38795228
Alignment:
Q  261 tcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||| ||||||||||||  |||| |||||  |||||| | || |||| ||||| ||||||||||||||||    
T  38795156 tcaatttttctatatatttccaacccaccaaagttctcccctcccttcccctccaaactcccaaacaaagcct 38795228  T

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Target: scaffold0001 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 67501 - 67399
Alignment:
Q  122 tactctgtagtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtactagatgggcttttgttggtttttaatatat 221  Q
    |||| |||||||||||| |||| |||||||||||| ||||| |||||||||||||||||| |  |||||| ||| |   |||||||||||||||||||||    
T  67501 tactgtgtagtagcttgtctgtattattgtaacatctgaacattttagttttctttggtagatcttgtacaagaggattttttgttggtttttaatatat 67402  T
Q  222 tca 224  Q
    |||    
T  67401 tca 67399  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 330
Target Start/End: Complemental strand, 43733017 - 43732936
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaag 330  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||| ||||||| |||||||  |||| |||||||||||||    
T  43733017 tgtgaaagatttctccatttctctatacaattctcaccctccaaaaccctcccttcccctccc-cccaaactcccaaacaaag 43732936  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 28192609 - 28192642
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattta 387  Q
    |||||||||||||||| |||||||||||||||||    
T  28192609 ttttatattttttgcggttaaaaattcatattta 28192642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 4780396 - 4780332
Alignment:
Q  38 ttttcgattttgagtatatggtttggagattgaaccctttgttatgttttcaaattgtaacataa 102  Q
    |||| |||||||||||| || ||||||| || || ||||| || ||||||||| |||||||||||    
T  4780396 tttttgattttgagtatttgatttggaggttaaatcctttattgtgttttcaagttgtaacataa 4780332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 33356317 - 33356357
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  33356317 ttttatattttttgcggttaaaaatttatatttaattcatg 33356357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 24683 - 24576
Alignment:
Q  127 tgtagtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtactagatgggcttttgttggtttttaatatattcacc 226  Q
    ||||||||||||||||| ||||||||||||   ||| ||| || ||| |||| |||| ||| |||||||||  ||||||||||||||||| |||||| |     
T  24683 tgtagtagcttgactgtcttattgtaacatcataacatttaagctttatttgatacattttatactagatgaacttttgttggtttttaacatattctct 24584  T
Q  227 tagctttt 234  Q
    ||||||||    
T  24583 tagctttt 24576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 42112861 - 42112774
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    ||||||||||||||| |||||||| |||| ||| ||||| | ||||| || |||| ||||||| ||||| ||||||||||||||||||    
T  42112861 tgtgaaagatttctccatttctctctatacttcccaccccctaaaacccttccttcccctcccctccaaactcccaaacaaagcctaa 42112774  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 6066673 - 6066579
Alignment:
Q  129 tagtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtactagatgggcttttgttggtttttaatatattc 223  Q
    ||||||||||||||||||||||||| || |  || |||||| || ||||||||||| ||||||| |    |||||||||||||||||||||||||    
T  6066673 tagtagcttgactgtgttattgtaatatctcgacattttagcttcctttggtacaccttgtactggggaagcttttgttggtttttaatatattc 6066579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 36713814 - 36713731
Alignment:
Q  19 ctaaaactgcaatatgactttttcgattttgagtatatggtttggagattgaaccctttgttatgttttcaaattgtaacataa 102  Q
    |||||| |||| |||| |||||||||||||||| | |  ||||| ||||| |  |||||||| |||||||||||||||||||||    
T  36713814 ctaaaattgcattatgcctttttcgattttgagaacacagtttgtagattaactcctttgttgtgttttcaaattgtaacataa 36713731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 385
Target Start/End: Complemental strand, 40270106 - 40270075
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatt 385  Q
    ||||||||||||||||||||||||||||||||    
T  40270106 ttttatattttttgcgcttaaaaattcatatt 40270075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 23552355 - 23552409
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctt 302  Q
    ||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||    
T  23552355 tgtgaaaaatttctcaatttttctctatatttctcaccttccaaagctctacctt 23552409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 3658674 - 3658722
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||| ||||| | ||||||| ||||| ||||||||||||||||||    
T  3658674 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcctaa 3658722  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 5906385 - 5906345
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  5906385 ttttatattttttgcggttaaaaatttatatttaattcatg 5906345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 5968205 - 5968253
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||| ||||| | ||||||||| ||| ||||||||||||||||||    
T  5968205 tccaaaaccctcccctcccctccctttcaaactcccaaacaaagcctaa 5968253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 7667328 - 7667376
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||| ||||| | ||||||| ||||| ||||||||||||||||||    
T  7667328 tccaaaaccctcccctcccctcccctccaaactcccaaacaaagcctaa 7667376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 38778126 - 38778086
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  38778126 ttttatattttttgtggttaaaaattcatatttaattcatg 38778086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 40056315 - 40056275
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||||| | ||||||||||||||||| ||||||    
T  40056315 ttttatattttttgaggttaaaaattcatatttaattcatg 40056275  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 10231394 - 10231486
Alignment:
Q  130 agtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtactagatgggcttttgttggtttttaatatatt 222  Q
    ||||||||| | ||||||||||||||| ||||| |||||| || ||||| ||||| |||||||| |   | ||||||||||||||||||||||    
T  10231394 agtagcttgtcagtgttattgtaacatctgaacattttagcttcctttgatacaccttgtactatagaagtttttgttggtttttaatatatt 10231486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 24735076 - 24735141
Alignment:
Q  264 atttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaa 329  Q
    |||| ||||||||||||  |||| ||||||| ||||| | ||||||| ||||| ||||||||||||    
T  24735076 atttttctatatatttccaaccccccaaaaccctcccctcccctcccctccaaactcccaaacaaa 24735141  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 34914545 - 34914497
Alignment:
Q  287 tccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||| ||||| ||||||||| || || ||||||||||||||||||    
T  34914545 tccaaaaccctccccttccctcccctcaaaactcccaaacaaagcctaa 34914497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 16518992 - 16518906
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    ||||||||||||||| |||||||| | |||||  ||||||||||| || | |||| ||||||| ||||| ||||||||||||||||||    
T  16518992 tgtgaaagatttctccatttctctttgtatttaccaccctccaaagcttttccttcccctcccctccaa-ctcccaaacaaagcctaa 16518906  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 15803350 - 15803435
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||||||||||||||||  |  |||||||||| ||| ||||| |  | |||| ||||||| ||||| ||||||||||||||||    
T  15803350 tgtgaaagatttctcaattttcccctatatttctctccccccaaagcctttccttcccctcccctccaaactcccaaacaaagcct 15803435  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 26599118 - 26599071
Alignment:
Q  288 ccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    ||||| |||||| |||||||||| ||||| ||||||||||||||||||    
T  26599118 ccaaagctctccttttccctcccatccaaactcccaaacaaagcctaa 26599071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 10165332 - 10165287
Alignment:
Q  288 ccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||||||||||| | ||||| ||||| ||||||||||||||||    
T  10165332 ccaaaactctcccttcctctcccctccaaactcccaaacaaagcct 10165287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 8990850 - 8990778
Alignment:
Q  264 atttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaat 336  Q
    |||| ||||||||||||  |||| ||||| | ||||| |||| |||| ||||| |||||||||||| ||||||    
T  8990850 atttttctatatatttccaaccccccaaagccctccccttccttcccctccaaactcccaaacaaaacctaat 8990778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 18807100 - 18807164
Alignment:
Q  38 ttttcgattttgagtatatggtttggagattgaaccctttgttatgttttcaaattgtaacataa 102  Q
    |||||||||||||||| ||||||||||||  ||  ||||||||||| ||||| |  |||||||||    
T  18807100 ttttcgattttgagtacatggtttggagagcgagtcctttgttatgctttcagacggtaacataa 18807164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 23390194 - 23390162
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattt 386  Q
    |||||||||||||||| ||||||||||||||||    
T  23390194 ttttatattttttgcggttaaaaattcatattt 23390162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Original strand, 26260684 - 26260720
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagtt 390  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  26260684 ttttatattttctgcggttaaaaattcatatttagtt 26260720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 54126463 - 54126523
Alignment:
Q  273 tatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    |||||||| ||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||    
T  54126463 tatatttcccaccccccaaagctctcccttcccctccccttcaatctcccaaacaaagcct 54126523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 40118803 - 40118717
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    ||||||||||||||| ||||| ||  ||||||||||||| ||||| | || |||| |||| || ||||| ||| ||||||||||||||    
T  40118803 tgtgaaagatttctccatttccctcgatatttctcaccc-ccaaagcccttccttcccctaccctccaaactctcaaacaaagcctaa 40118717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 30121409 - 30121340
Alignment:
Q  264 atttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    |||| ||||||||||||  |||| ||||| | ||||| | ||||||| ||||| ||||||||||||||||    
T  30121409 atttttctatatatttccaaccccccaaagccctcccctcccctcccctccaaactcccaaacaaagcct 30121340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 45301114 - 45301081
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattta 387  Q
    |||||||||||||||| |||||||||||||||||    
T  45301114 ttttatattttttgcggttaaaaattcatattta 45301081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 52620736 - 52620651
Alignment:
Q  250 tgaaagatttctcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||||||| |||| |||| |||  ||||||| ||| | ||||| | ||||| | ||||||| ||||| ||||||||||||||||||    
T  52620736 tgaaagatatctccatttttctcaatatttcacactccccaaagccctcccctcccctcccctccaaactcccaaacaaagcctaa 52620651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 44412044 - 44411972
Alignment:
Q  261 tcaatttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcct 333  Q
    ||||||| ||||||||||||  |||| ||||| | ||||| | || |||| ||||| ||||||||||||||||    
T  44412044 tcaatttttctatatatttccaaccccccaaagccctcccctcccttcccctccaaactcccaaacaaagcct 44411972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 45779041 - 45779081
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatatttagttcatg 394  Q
    |||||||||||| ||| ||||||||||||||||| ||||||    
T  45779041 ttttatatttttggcggttaaaaattcatatttaattcatg 45779081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 8117 - 8180
Alignment:
Q  130 agtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtacta 193  Q
    ||||||||| | ||||||||||||||| ||||| |||||| || ||||| ||||| ||||||||    
T  8117 agtagcttgtcagtgttattgtaacatctgaacattttagcttcctttgatacaccttgtacta 8180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 335
Target Start/End: Complemental strand, 38120082 - 38120011
Alignment:
Q  264 atttctctatatatttctcaccctccaaaactctccctttccctcccttccaatctcccaaacaaagcctaa 335  Q
    |||| ||||||||||||  |||| ||||| ||||||| | || |||| ||||| ||||||||||||||||||    
T  38120082 atttttctatatatttccaaccccccaaagctctcccctcccttcccctccaaactcccaaacaaagcctaa 38120011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 15770239 - 15770288
Alignment:
Q  248 tgtgaaagatttctcaatttctctatatatttctcaccctccaaaactctc 298  Q
    ||||||||||||||  |||||||||||||||||| | ||||||||||||||    
T  15770239 tgtgaaagatttctgcatttctctatatatttctta-cctccaaaactctc 15770288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 10596397 - 10596364
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattta 387  Q
    |||||||||||||||| |||||||||||||||||    
T  10596397 ttttatattttttgcggttaaaaattcatattta 10596364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 32198485 - 32198534
Alignment:
Q  171 tttctttggtacactttgtactagatgggcttttgttggtttttaatata 220  Q
    |||||||||||||| |||| ||||| | |||| |||||||||||||||||    
T  32198485 tttctttggtacaccttgtgctagaggtgcttgtgttggtttttaatata 32198534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 38539859 - 38539892
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattta 387  Q
    |||||||||||||||| |||||||||||||||||    
T  38539859 ttttatattttttgcggttaaaaattcatattta 38539892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 42898691 - 42898789
Alignment:
Q  122 tactctgtagtagcttgactgtgttattgtaacatttgaactttttagttttctttggtacactttgtactagatgggcttttgttggtttttaatatat 221  Q
    |||| |||| ||||||| || ||||||||||||| |||||| |||||| || |||| |||||| |||||| | | | ||||||||||| |||||||||||    
T  42898691 tactgtgtaatagcttgtctttgttattgtaaca-ttgaacattttagcttccttt-gtacaccttgtaccataggagcttttgttgg-ttttaatatat 42898787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 12784 - 12817
Alignment:
Q  354 ttttatattttttgcgcttaaaaattcatattta 387  Q
    ||||||||||||| ||||||||||||||||||||    
T  12784 ttttatattttttacgcttaaaaattcatattta 12817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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