View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2975_low_9 (Length: 414)
Name: NF2975_low_9
Description: NF2975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2975_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 42481329 - 42481622
Alignment:
| Q |
1 |
ccctggaaagttcatcttcggatacttaatttctctgacataatatatataaccatttcagatattatcccaaattgannnnnnnnnnnnntatatgcaa |
100 |
Q |
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| T |
42481329 |
ccctggaaagttcatcttcagatacttaatttctctgacataatatatataaccatttcagatattatcccaaattgaacacacacacacatatatgcaa |
42481428 |
T |
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| Q |
101 |
gctagttccatgttattcttgaaatgaaaaagtaatatatactatattgtttatgagttaccttcctttgacagaatcactggtgattttaaaaatagct |
200 |
Q |
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| T |
42481429 |
gctagttccatgttattcttgaaatgaaaaagtaatatatactatattgtttatgagttaccttcatttgacagaatcactggtgattttaaaaatagct |
42481528 |
T |
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| Q |
201 |
acactttatgattcaaaaaatgctttacctgtgccccagctccatagattcttatgtccaagaaggtatgtcttccctgatgaaaggaaaggaa |
294 |
Q |
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| T |
42481529 |
acactttatgattcaaaaaatgctttacctgtgccccagctccatagattcttatgtccaagaagatatgtcttccctgatgaaaggaaaggaa |
42481622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 42481683 - 42481742
Alignment:
| Q |
345 |
gaagatgttttgcaggttaggcattatatgatttcttttatgtcttgttctacctctctg |
404 |
Q |
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| T |
42481683 |
gaagatgttttgcaggttaggcattatatgatttcttttatgtcttgttctacctctctg |
42481742 |
T |
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